View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549_low_8 (Length: 368)
Name: NF5549_low_8
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 12633994 - 12634337
Alignment:
| Q |
11 |
atcatcatgcccactttgtagtccgaaatcaaaagggaaaaaa---cgaaacaggtatagtgacaatacttctaattcatagttcaattgctttaaaacg |
107 |
Q |
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| T |
12633994 |
atcatcatgcccactttgtagtccgaaatcaaaagggaaaaaaaaacgaatcaggtatagtgacaatacttctaattcatagttcaattgctttaaaacg |
12634093 |
T |
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| Q |
108 |
cttgaatcgaaaggaaaaatgtgaccaaaccattcaaataactgaaccgtagatgctaccgatttaaagttcaattggttgagtcgtctagttcaatttt |
207 |
Q |
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| T |
12634094 |
cttgaatcgaaaggaaaaatgtgatcaaaccattcaaataactgaaccgtagatgctaccggtttaaagttcaattggttgaatcgtctagtttaatttt |
12634193 |
T |
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| Q |
208 |
taaaaacataggatataagaccaatttaatggttgatgcagattggaaattgtaaatatgcatctagcaatcccatggtaggaataaaatttcatagatt |
307 |
Q |
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| T |
12634194 |
t-aaaacataggatataagaccattttaat-gttgatgcagattggaaattgtaaatatgcatctagcaatcccacggtaggaataaaatttcatagatt |
12634291 |
T |
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| Q |
308 |
aataaacagctaatttccaaggtatcaccacacttggcactgaagt |
353 |
Q |
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| T |
12634292 |
aataaacagctaatttccaaggtatcaccacacttggcaccgaagt |
12634337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 32367887 - 32367932
Alignment:
| Q |
225 |
agaccaatttaatggttgatgcagattggaaattgtaaatatgcat |
270 |
Q |
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| T |
32367887 |
agaccattttgatggttggtgcagattggagattgtaaatatgcat |
32367932 |
T |
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