View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5550_low_1 (Length: 515)
Name: NF5550_low_1
Description: NF5550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5550_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 30723179 - 30723562
Alignment:
| Q |
14 |
attatactgcactatatttaagttgctacaagcagaatagtctcgagcttctaaaaaattgacatatttaaagataaatatagtaatatacagcatagct |
113 |
Q |
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| T |
30723179 |
attaaactgcactatatttaagttgctacaagcagaatagtctcgagcttctaaaaaattgacatatttagagataaatatagtaatatacagcatagct |
30723278 |
T |
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| Q |
114 |
aattaataacgtggatatggatgtatcacaccaagagtaaaaacaataacatgctgctataaagccaatgatgtaatgttttttcttttctaacttcacc |
213 |
Q |
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| T |
30723279 |
aattaataacgtggatatggatgtatcacaccaagaggaaaaacaataacatgctgctataaagccaatgatgtaatgttttttcttttctaacttcacc |
30723378 |
T |
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| Q |
214 |
aaacttaattcattgatatttaatatactatatgactatttataagagtatattattaatgttcaattcccgtgtgtagttggttggttttttggatgtg |
313 |
Q |
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| T |
30723379 |
aaacttaattcattgatatt--------tatatgactgtttataagagtatattattaatgttcaattcccgtgtgtagttggttggttttttggatgtg |
30723470 |
T |
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| Q |
314 |
ttaggaagcaacatgtggaaaacaattggaatgaatgatgtggtgtaggaagcaagtaggtgagtgagaatgatcaatccaggt-aaaatggtgaatgcc |
412 |
Q |
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| T |
30723471 |
ttaggaagcaacatgtggaaaacaattg----gaatgctgtggtgtaggaagcaagtag----gtgagagtgatccatccaggtaaaaatggtgaatgcc |
30723562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 497
Target Start/End: Original strand, 30723592 - 30723647
Alignment:
| Q |
442 |
tatttattcataattttgtgcatgtgagaaagagaactgttggctccttggaatat |
497 |
Q |
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| T |
30723592 |
tatttattcataattttgtgcatgtgagaaagagaactgttggctccttggaatat |
30723647 |
T |
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