View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5550_low_2 (Length: 323)
Name: NF5550_low_2
Description: NF5550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5550_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 25259057 - 25259380
Alignment:
| Q |
11 |
cacagagaaagtagttggactcttgtttccatcaatgaacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacct |
110 |
Q |
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| T |
25259057 |
cacagagaaagtagttggactcttgtttccatcaatgcacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacct |
25259156 |
T |
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| Q |
111 |
gaaaaacaaaagaaacttcagaactttgaatagtttccaacagggtac--------aaacnnnnnnncgaatgatacttttaatactgtgagtttattca |
202 |
Q |
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| T |
25259157 |
gaaaaacaaaagaaacttcagaactttgaatagtttccaacagggtacaaaccaaaaaacaaaaaaacgaatgatacttttaatactgtgagtttattca |
25259256 |
T |
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| Q |
203 |
aaatattagattctaataacaactaaattccaaagtcctttagaaaccatatctaatttaacattg---nnnnnnntcaagttttattttgaaaaaatca |
299 |
Q |
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| T |
25259257 |
aaatattagattctaataacaactaaattccaaagtcctttagaaactatatctaatttaacattgaaaaaaattatcaagttttattttgaaaaaatca |
25259356 |
T |
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| Q |
300 |
agatacaattctagttaacagttc |
323 |
Q |
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| T |
25259357 |
agatacaattctagttaatagttc |
25259380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 25322847 - 25323170
Alignment:
| Q |
11 |
cacagagaaagtagttggactcttgtttccatcaatgaacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacct |
110 |
Q |
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| T |
25322847 |
cacagagaaagtagttggactcttgtttccatcaatgcacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacct |
25322946 |
T |
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| Q |
111 |
gaaaaacaaaagaaacttcagaactttgaatagtttccaacagggtac--------aaacnnnnnnncgaatgatacttttaatactgtgagtttattca |
202 |
Q |
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| T |
25322947 |
gaaaaacaaaagaaacttcagaactttgaatagtttccaacagggtacaaaccaaaaaacaaaaaaacgaatgatacttttaatactgtgagtttattca |
25323046 |
T |
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| Q |
203 |
aaatattagattctaataacaactaaattccaaagtcctttagaaaccatatctaatttaacattg---nnnnnnntcaagttttattttgaaaaaatca |
299 |
Q |
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| T |
25323047 |
aaatattagattctaataacaactaaattccaaagtcctttagaaactatatctaatttaacattgaaaaaaattatcaagttttattttgaaaaaatca |
25323146 |
T |
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| Q |
300 |
agatacaattctagttaacagttc |
323 |
Q |
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| T |
25323147 |
agatacaattctagttaatagttc |
25323170 |
T |
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