View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5550_low_3 (Length: 232)
Name: NF5550_low_3
Description: NF5550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5550_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 51343052 - 51342835
Alignment:
| Q |
1 |
aagaagaagactaaattgtgcaatctagaaaaacttcaaaagcaatgtttgaggcagcaaaatcaagaaacattataattttagattttatcttcaacta |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51343052 |
aagaagaagaccaacttgtgcaatctagaaaaacttcaaaagcaatgtttgaggcagcaaaatcaggaaacattataattttagattttatcttcaacta |
51342953 |
T |
|
| Q |
101 |
caatccgaatctattcatggaagtcaattcagaagggcaaatcatacttcacattgctatcttatataggaaaggaagtgtatatcgtttaatattcaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342952 |
caatccgaatctattcatggaagtcaattcaaaagggcaaagcatacttcacattgctatcttatataggaaaggaagtgtatatcgtttaatattcaca |
51342853 |
T |
|
| Q |
201 |
aagggttcatacaagaat |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
51342852 |
aagggttcatacaagaat |
51342835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 51319205 - 51319093
Alignment:
| Q |
29 |
aaaaacttcaaaagcaatgtttgaggcagcaaaatcaagaaacattataattttagattttatcttcaactacaatccgaatctattcatggaagtcaat |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | | | | ||||| |||||||||| ||||| |||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
51319205 |
aaaaacttcaaaagcaatgtttgatgcagcacagttaggcaacatcttaattttagaatttattttcaactataatccgaatatatttatggaagtcaat |
51319106 |
T |
|
| Q |
129 |
tcagaagggcaaa |
141 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
51319105 |
tctgaagggcaaa |
51319093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University