View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5551-Insertion-3 (Length: 743)
Name: NF5551-Insertion-3
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5551-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 43519426 - 43519151
Alignment:
| Q |
8 |
agcaagacctttgttatttttactacctttggtggtggcatcttaaaaagttacactaattgatcgattatgagtcgatttgatcgataattcccaagga |
107 |
Q |
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| T |
43519426 |
agcaagacctctgttatttttactaccttcggtggtggcatcttaaaaagttacactaattgatcgattatgagtcgatttgatcgataattcccaagga |
43519327 |
T |
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| Q |
108 |
aaatataaactttatatttggtagaatcaatttgattgataattattgctttgagggtagaggccctggccaaagttttcaatgtcactcaccgcaagat |
207 |
Q |
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| T |
43519326 |
aaatataaactttatatttggtagaatcaatttgattgataattattgctttgagggtagag--tctggccaaagtttttaatgtcactcaccgcaagat |
43519229 |
T |
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| Q |
208 |
gatccataaactccataagcatgtctcctaatctcttcacatgatgacaatagcaatatcatgcccatcaacttcaat |
285 |
Q |
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| T |
43519228 |
gatccataaactccataagcatgtctcctaatctcttcacatgatgacaatagcaatatcatgcccatcaacttcaat |
43519151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 349 - 738
Target Start/End: Complemental strand, 43519087 - 43518701
Alignment:
| Q |
349 |
gaatattgcgtaaaagacaaatgatctatggatggtcttaatttacccattttagccaattatggatagattcaaaatagcaaaaaactatataaggtct |
448 |
Q |
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| T |
43519087 |
gaatattgcgtaaaagacaaatgatctatggatggtcttaatttacccattttagccaattatggatagattcaaaatagcaaaaa-------------- |
43519002 |
T |
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| Q |
449 |
gtatcactataaaaggtttgttttttccttctgatttggcatcaatcagatttttcatgattaaaatagataacaaacaatcaaatagattcctttgttg |
548 |
Q |
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| T |
43519001 |
------ctatataaggtttgttttttccttctgatttggcatcaattagatttttcatgattaaaatagataacaaacaatcaaatagattcttgtgttg |
43518908 |
T |
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| Q |
549 |
tgaatatggtcccttcctcttcccatataaatcac-----------------tagatactcggtcattcttttccgtcttattctttcatcatatcattt |
631 |
Q |
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| T |
43518907 |
tgaatatggtcccttcctcttcccatataaatcaccaattaccaacaatcactagatactcggtcattcttttccgtcttattctttcatcatatcattt |
43518808 |
T |
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| Q |
632 |
tcttgcatatgcaaaatgattcttcctctctttaagtcttccaaatctcacctacctattcccatgnnnnnnncttggatgacacgtaatgtttacactc |
731 |
Q |
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| T |
43518807 |
tcttgcatatgcaaaatgattcttcctctctttaagtcttccaaatctcacctacccattcccatgtttttttcttggatgacacgtaatgtttacattc |
43518708 |
T |
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