View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5551-Insertion-4 (Length: 715)
Name: NF5551-Insertion-4
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5551-Insertion-4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 85 - 715
Target Start/End: Original strand, 2053879 - 2054531
Alignment:
| Q |
85 |
gcttgtgcaacacttctcaaacactgtcaattgtctcccaaggcactaaacaagtcccatttcccccctcactttcacatgctgccatcaattacgatta |
184 |
Q |
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| T |
2053879 |
gcttgtgcaacacttctcaaacactgtcaattgtctcccaaggcactaaacaagtcccatttcccccctcactttcacatgctgccatcaattacgatta |
2053978 |
T |
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| Q |
185 |
gtactggaatttgattcaatacctacgaagcatg-------------------gatacgacactaacactgacacatcgataccgttaataatttnnnnn |
265 |
Q |
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| T |
2053979 |
gtactggaatttgattcaatacctatgaagcatgaatacgaacatggacaccggatacgacactaacactgatacatcgacaccgttaataatttaaaaa |
2054078 |
T |
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| Q |
266 |
nnn-taac-ataattgagtataataatgtgtcggtgtcgaattgccaggacacgcctaatctgaagagtgtccgtgtttcatagttcaatacacgaaata |
363 |
Q |
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| T |
2054079 |
aaaataaccataattcagtataataatgtctcggtgtcgaattgccgggacacgcctaatctgaagagtgtccgtgtttcatagttcaatacacaaaata |
2054178 |
T |
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| Q |
364 |
aaatcttaaa-tcatttttctttagcattcattaacatattcataattttaccttgatccacacacgagtgaaaaagtacatggattaattatttaatca |
462 |
Q |
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| T |
2054179 |
atatcttaaaatcatttttctttagctttaattaacatattcataatattaccttgatccacacacgagtgaaaaagtacatggattaattatttaatca |
2054278 |
T |
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| Q |
463 |
aggtttagatttcacaacactccatattttagttgttgaacttgccgtttatgaaagcaatcggtttttcccttttatatctgtatggttcagaccacaa |
562 |
Q |
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| T |
2054279 |
aggtttagatttcacaacactccatattttagttgttgaacttgccgtttatgaaagcaatcggtttttcccttttatatctgtatggttcagaccacaa |
2054378 |
T |
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| Q |
563 |
gcaaggatatatgatgttatttgaatcaacataatcaaggtcttttttgttgtcaaaatttgagtgaaggcaatgataataatatagtactcccatggtg |
662 |
Q |
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| T |
2054379 |
gcaaggatatatgatgttatttgaatcaacataatcaaggtcttttttgttgtcaaaatttgagtgaaggcaatgataataatatagtactcccatggtg |
2054478 |
T |
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| Q |
663 |
attataaaccaaaagtaactaatttcacactccctaaagaatttcgttgagta |
715 |
Q |
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| T |
2054479 |
attataaaccaaaagtaactaatttcacactccctaaagaatttcgttaagta |
2054531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 2053802 - 2053852
Alignment:
| Q |
8 |
acatgacaagtctctttttccatgaatcataagagctggtgcaaattcatc |
58 |
Q |
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| T |
2053802 |
acatgacaagtctctttttccatgaatcataagagctagtgcaaattcatc |
2053852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 18513214 - 18513175
Alignment:
| Q |
308 |
ccaggacacgcctaatctgaagagtgtccgtgtttcatag |
347 |
Q |
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| T |
18513214 |
ccaggacacgcctaatctgaggagtgtccgtgcttcatag |
18513175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 36635413 - 36635454
Alignment:
| Q |
311 |
ggacacgcctaatctgaagagtgtccgtgtttcatagttcaa |
352 |
Q |
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| T |
36635413 |
ggacacgcctaatccgaagagtgtccgtgcttcatagatcaa |
36635454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 13360348 - 13360310
Alignment:
| Q |
312 |
gacacgcctaatctgaagagtgtccgtgtttcatagttc |
350 |
Q |
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| T |
13360348 |
gacacgcctaatccgaagagtgtccgtgcttcatagttc |
13360310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 7175112 - 7175062
Alignment:
| Q |
211 |
gaagcatggatac-gacactaacactgacacatcgataccgttaataattt |
260 |
Q |
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| T |
7175112 |
gaagcatggatacagacacggacactgacacatcgacaccgttaataattt |
7175062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 2218310 - 2218348
Alignment:
| Q |
310 |
aggacacgcctaatctgaagagtgtccgtgtttcatagt |
348 |
Q |
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| T |
2218310 |
aggacacgcctaatctgaggagtgtccgtgcttcatagt |
2218348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 16812639 - 16812677
Alignment:
| Q |
311 |
ggacacgcctaatctgaagagtgtccgtgtttcatagtt |
349 |
Q |
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| T |
16812639 |
ggacacgcctaatctgaggagtgtccgtgcttcatagtt |
16812677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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