View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5551-Insertion-5 (Length: 574)
Name: NF5551-Insertion-5
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5551-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 574
Target Start/End: Original strand, 43267276 - 43267845
Alignment:
| Q |
11 |
gtcacacttactatcatggaatccagaatcataatactcc-----atattaaaaacgtattgaaattgacaaaccagcacttcatggcttggtaactgct |
105 |
Q |
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| T |
43267276 |
gtcacacttactatcatggaatccagaatcataatactcccgagtatagtaaaaacgtattgaaattgacaaaccagcacttcatggcttggtaactgct |
43267375 |
T |
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| Q |
106 |
ggttcaggttcttatcattgtctttctaatttggatttggttccaattctcttgttcatcacatagaacaaatattactcttgttcaaagttcaaccata |
205 |
Q |
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| T |
43267376 |
ggttcaggttcttatcattgtctttttaatttggatttggttccaattctcttgttcatcacatagaacaaatattactcttgttcaaagttcaaccata |
43267475 |
T |
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| Q |
206 |
ccttacattgcagatgaaaatccatattacaattaaatttaaggctagatgataacgggttcacaatacagttcgaaacattttttcccttaccgagatc |
305 |
Q |
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| T |
43267476 |
ccttacattgcagatgaaaatccatattaaaattaaatttaaggctagatgataacgagttcacaatacagttcgaaacattttttcccttaccgagatc |
43267575 |
T |
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| Q |
306 |
atggaacaaagtatatccatcttgtagatcttatataccacaccatcgttgttaagacttttttatggtcaacttcaagaaacaattcacgtataaataa |
405 |
Q |
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| T |
43267576 |
atggaacaaagtatatccatcttgtagatcttatataccacaccatcgttgttaagacttttttatggtcaacttcaagaaacaattcacgtataaataa |
43267675 |
T |
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| Q |
406 |
ccatcgcacttattttttcactgcaca-cctagtcaccacttattgtcaagtaatctagaggcataatattattaagcagacccaaattgacaataccag |
504 |
Q |
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| T |
43267676 |
ccatcgcacttattttttcactgcacaccctagtcaccacttattgtcaagcaatctagaggcataatattattaaacagactcaaattgacaataccag |
43267775 |
T |
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| Q |
505 |
cactacgtcgtgactttgtagctgcagcttctgtgcaaattcaatacatccttgcaccaaagtttcattg |
574 |
Q |
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| T |
43267776 |
cactacgtcgtgactttgtagctgcagcttctgtgcaaattcaatacatccttgcaccaaagtttcattg |
43267845 |
T |
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