View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5551_high_2 (Length: 415)
Name: NF5551_high_2
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5551_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 43266891 - 43267274
Alignment:
| Q |
11 |
cacagacccggcgcacatcttcactagccccgcaatgaatccctttattgtagaagcatcaaacggttccctttctttcaatacaaatatctgccataag |
110 |
Q |
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| T |
43266891 |
cacagacccggcgcacatcttcactagccctgcaatgaatccctttattgtagaagcatcaaacggttccctttctttcaatacaaatgtctgccataag |
43266990 |
T |
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| Q |
111 |
ttagatttttccaatacctttggagtatatttggatggagggtcgttgagggagggaggacttannnnnnnnnnnnnaaattaagtgacagttgtcagtc |
210 |
Q |
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| T |
43266991 |
ttagatttttccaatacctttggagtatatttggatggagggtcgttgagggagggaggacttatttttctttttttaaattaagtgacagttgtcagtc |
43267090 |
T |
|
| Q |
211 |
tgccacatagttagtgtaggataatctgagtttagtgcaggaaaatgtcaagctataaatattgcttttgaaagaagctataaatattgctgttaaccac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43267091 |
tgccacatagttagtgtaggataatctgagtttagtgcaggaaaatgtcaagctataaatattgcttttgaaagaagctataaatattgctgttaaccac |
43267190 |
T |
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| Q |
311 |
ttgtaacaaaatcaattcannnnnnnatcaatatacaaagagatcatcagcatctccatcttttttctcaattctaacaatttc |
394 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43267191 |
ttgtaacaaaatcaattcatttttcaatcaatatacaaagagatcatcagtatctccatcttttttctcaattctaacaatttc |
43267274 |
T |
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