View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5551_high_4 (Length: 323)

Name: NF5551_high_4
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5551_high_4
NF5551_high_4
[»] chr2 (1 HSPs)
chr2 (17-301)||(6335625-6335921)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 6335921 - 6335625
Alignment:
Q  17 tccaagaagtataacacaccgttcataatttatagaaaattgatctcacgcaccaaaaaattaccttaataccccaaccagcagttaaatgttgtaggag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6335921 tccaagaagtataacacaccgttcataatttatagaaaattgatctcacgcaccaaaaaattaccttaataccccaaccagcagttaaatgttgttggag 6335822  T
Q  117 attttg------------gatacgtaagagcaatttcagaagcttaaatagcaataccctaatttatatccctccatgcaatggtaatatcaggcttcac 204  Q
    ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6335821 attttgaaggtaattttggatacgtaagagcaatttcagaagcttaaatagcaataccctaatttatatccctccatgcaatggtaatataaggcttcac 6335722  T
Q  205 gtcagctaggcttccaatttccaaagccaatttgccacaccgtgtcttcaaactacatcccccttttatttctatatatgtaggacatctagagtca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6335721 gtcagctaggcttccaatttccaaagccaatttgccacaccgtgtcttcaaactacaccccccttttatttctatatatgtaggacatctagagtca 6335625  T

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