View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5551_low_1 (Length: 490)
Name: NF5551_low_1
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5551_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 23 - 473
Target Start/End: Original strand, 39951502 - 39951954
Alignment:
| Q |
23 |
tttccccctttaaaataatctattcactgaatgatttggagaattctaaggtatcataattcatgagattgtaaccagttgcatgaagttcaactaatta |
122 |
Q |
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| T |
39951502 |
tttccccccttaaaataatctattcactgaatgatttggagaattctaaggtatcataattcatgagattgtaaccagttgcatgaagttcaactaatta |
39951601 |
T |
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| Q |
123 |
agctatttttctaggctactaactgtcctacttctttggtatattggtgtgggaaatgcatatacatataacactgttgactactttgattttattctct |
222 |
Q |
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| T |
39951602 |
agctatttttctaggctactaactgtcctacttctttggtatattggtgtgggaaatgcatatacatataacactgttgactactttgattttattctct |
39951701 |
T |
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| Q |
223 |
tctctatttagaatatcatttactgaagtt--tatttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacat |
320 |
Q |
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| T |
39951702 |
tctgtatttagaatatcatttactgaagtttatatttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacat |
39951801 |
T |
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| Q |
321 |
ttacttcgtaagaagaattcatgtatttttcattatgctgttctaggtatttttgggattacgtagaaaggaaacaacttgaatggtctgtgtcaagtga |
420 |
Q |
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| T |
39951802 |
ttacttcgtatgaagaattcatgtatttttcattatgctgttctaggtatttttgggattacgtagaaaggaaacaacttgaatggtctgtgtcaagtga |
39951901 |
T |
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| Q |
421 |
atggtctccaaatggatgctatttcatgacagcaaccacaacaccgaggcttc |
473 |
Q |
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| T |
39951902 |
atggtctccaaatgggtgctatttcatgacagcaaccacaacaccgaggcttc |
39951954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 251 - 473
Target Start/End: Complemental strand, 34230932 - 34230696
Alignment:
| Q |
251 |
tttatttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtaagaagaattcatgtattttt |
350 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| || |||||||||| ||||| |
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| T |
34230932 |
tttatttctggcaagtatctgatgtattttcaaatgacacaagctcagatgcatgcacaattgcaaacatttgcttcgtatgaggaattcatgtgttttt |
34230833 |
T |
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| Q |
351 |
cattatgctgttctaggtatttttgggattacgtagaaaggaaacaact---------------tgaatggtctgtgtcaagtgaatggtctccaaatgg |
435 |
Q |
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| T |
34230832 |
cattatgttgttctaggta-ttttgggattacgtggaaaggaaacagcttgcatcaaccaaagctgaatggtctgtgtcaagtgaatggtctccagatgg |
34230734 |
T |
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| Q |
436 |
atgctatttcatgacagcaaccacaacaccgaggcttc |
473 |
Q |
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| T |
34230733 |
gtgctatttcatgacagcaacaacagctccaaggcttc |
34230696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 49198431 - 49198344
Alignment:
| Q |
156 |
ctttggtatattggtgtgggaaatgcatatacatataacactgttgactactttgattttattctcttctctatttagaatatcattt |
243 |
Q |
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| T |
49198431 |
ctttagtatattgttgtggcaaatgcatacacatataacattgttgactaatttaattttattcccttctctatttagaatatcattt |
49198344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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