View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5551_low_4 (Length: 377)
Name: NF5551_low_4
Description: NF5551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5551_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 8776196 - 8775838
Alignment:
| Q |
17 |
acaatcgtcacagaattaaggaattgttcataatcttcatcaacatcaaactgcacttcaggagtatcaaattcctgatcagaaacgagtgaatttcgcc |
116 |
Q |
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| T |
8776196 |
acaatcgtcacagaattaaggaattgttcataatcttcatcaacatcaaactgcacttcaggagtatcaaattcctgatcagaaacgagtgaatttcgcc |
8776097 |
T |
|
| Q |
117 |
taacacttgaactttttcctagtaactgatcatcttcatctacaccaacaccatcactaatatgatcagaaacagattgattcggaaaataactgcaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776096 |
taacacttgaactttttcctagtaactgatcatcttcatctacaccaacaccatcactaatatgatcagaaacagattgattcggaaaataactgcaacc |
8775997 |
T |
|
| Q |
217 |
ttctcctacatcctccctgccagtgttgtcgtcaaagttgacgtcaatatttgaaccactgtgattactagcacaatcaattccactatcatcgggatta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8775996 |
ttctcctacatcctccctgccagtgttgtcgtcaaagttgacgtcaatatttgaaccactgtgattactagcacaatcaattccactatcatcaggatta |
8775897 |
T |
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| Q |
317 |
tatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgcc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775896 |
tatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgcc |
8775838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 8782045 - 8782010
Alignment:
| Q |
104 |
agtgaatttcgcctaacacttgaactttttcctagt |
139 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
8782045 |
agtgaatttcgcttaacacttgaactttttcctagt |
8782010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 8787653 - 8787617
Alignment:
| Q |
143 |
tgatcatcttcatctacaccaacaccatcactaatat |
179 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |
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| T |
8787653 |
tgatcatcttcatctacaccaacatcatcgctaatat |
8787617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 8787821 - 8787785
Alignment:
| Q |
143 |
tgatcatcttcatctacaccaacaccatcactaatat |
179 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |
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| T |
8787821 |
tgatcaccttcatctacaccaacatcatcactaatat |
8787785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 361
Target Start/End: Original strand, 2541986 - 2542073
Alignment:
| Q |
271 |
accactgtgattactagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactg |
361 |
Q |
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|||||| |||||||||||||||||| || || |||||| ||||||| |||| |||| ||| ||||||||||| |||| |||||||||| |
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| T |
2541986 |
accactatgattactagcacaatcagtttcaatatcat---gattataagtagccaaataggatgcgtaatctgaatccacttcatcactg |
2542073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 2541480 - 2541519
Alignment:
| Q |
17 |
acaatcgtcacagaattaaggaattgttcataatcttcat |
56 |
Q |
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||||| ||||||||||||||||| |||||||||||||||| |
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| T |
2541480 |
acaatagtcacagaattaaggaactgttcataatcttcat |
2541519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 2542111 - 2542198
Alignment:
| Q |
285 |
tagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgcc |
375 |
Q |
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||||||||||| || || |||||| ||||||| |||| |||||||| || |||||||||||| |||||||| || || |||||||||| |
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| T |
2542111 |
tagcacaatcagtttcaatatcat---gattataagtagccaaaaaggatgtgtaatctgcatcgatttcatcaatgtcattgttgttgcc |
2542198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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