View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5552-Insertion-11 (Length: 299)

Name: NF5552-Insertion-11
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5552-Insertion-11
NF5552-Insertion-11
[»] chr6 (28 HSPs)
chr6 (113-218)||(1694071-1694175)
chr6 (8-103)||(28152062-28152153)
chr6 (8-106)||(17841593-17841688)
chr6 (11-104)||(17302518-17302609)
chr6 (230-281)||(1694000-1694051)
chr6 (8-105)||(10770678-10770777)
chr6 (8-86)||(16766677-16766752)
chr6 (11-86)||(12696304-12696376)
chr6 (8-86)||(8365523-8365598)
chr6 (8-86)||(9107374-9107449)
chr6 (8-86)||(34595114-34595189)
chr6 (49-86)||(3398599-3398636)
chr6 (8-39)||(9522915-9522946)
chr6 (8-39)||(9911532-9911563)
chr6 (49-104)||(10842494-10842549)
chr6 (8-86)||(426518-426593)
chr6 (8-86)||(7977834-7977909)
chr6 (12-86)||(8776981-8777052)
chr6 (50-104)||(17435162-17435215)
chr6 (74-104)||(34225886-34225916)
chr6 (76-105)||(7938059-7938088)
chr6 (49-86)||(7938096-7938133)
chr6 (49-86)||(9027158-9027195)
chr6 (8-37)||(28715321-28715350)
chr6 (50-86)||(9658859-9658895)
chr6 (76-104)||(18367781-18367809)
chr6 (49-89)||(19147445-19147485)
chr6 (11-39)||(31384944-31384972)
[»] chr2 (27 HSPs)
chr2 (8-105)||(37558938-37559032)
chr2 (9-104)||(30404855-30404952)
chr2 (8-106)||(18841017-18841117)
chr2 (8-86)||(19536401-19536477)
chr2 (11-88)||(21374706-21374780)
chr2 (8-104)||(37419704-37419798)
chr2 (11-104)||(39323226-39323316)
chr2 (50-86)||(6940235-6940271)
chr2 (8-39)||(2438723-2438754)
chr2 (8-39)||(18421987-18422018)
chr2 (49-104)||(19580323-19580378)
chr2 (50-85)||(24894370-24894405)
chr2 (75-106)||(27084228-27084259)
chr2 (8-86)||(11223867-11223942)
chr2 (8-86)||(14996227-14996303)
chr2 (8-86)||(20539678-20539753)
chr2 (49-86)||(12940977-12941014)
chr2 (76-105)||(26769460-26769489)
chr2 (76-105)||(27447088-27447117)
chr2 (10-39)||(30717536-30717565)
chr2 (63-104)||(41843403-41843444)
chr2 (75-104)||(44770206-44770235)
chr2 (76-104)||(21374781-21374809)
chr2 (50-86)||(21624246-21624282)
chr2 (8-36)||(21624294-21624322)
chr2 (49-81)||(27460011-27460043)
chr2 (11-39)||(33153448-33153476)
[»] chr5 (24 HSPs)
chr5 (9-104)||(14674231-14674323)
chr5 (11-89)||(39698518-39698593)
chr5 (12-104)||(43001762-43001851)
chr5 (8-86)||(21191060-21191135)
chr5 (49-86)||(22013394-22013431)
chr5 (49-105)||(6035444-6035500)
chr5 (50-86)||(21522730-21522766)
chr5 (50-86)||(21533296-21533332)
chr5 (8-39)||(6247646-6247677)
chr5 (8-39)||(7218271-7218302)
chr5 (8-39)||(15884012-15884043)
chr5 (8-39)||(21351909-21351940)
chr5 (8-86)||(15382457-15382534)
chr5 (49-101)||(3966467-3966520)
chr5 (76-105)||(15382420-15382449)
chr5 (49-86)||(19552585-19552622)
chr5 (8-85)||(19579682-19579756)
chr5 (8-37)||(21542056-21542085)
chr5 (10-39)||(21576751-21576780)
chr5 (8-37)||(24906305-24906334)
chr5 (49-86)||(36642804-36642841)
chr5 (50-86)||(6770523-6770559)
chr5 (50-86)||(15410491-15410527)
chr5 (74-102)||(41995417-41995445)
[»] chr1 (30 HSPs)
chr1 (8-103)||(46348387-46348479)
chr1 (49-99)||(18556498-18556548)
chr1 (8-86)||(1486713-1486788)
chr1 (8-85)||(42359453-42359527)
chr1 (11-105)||(14359529-14359624)
chr1 (8-104)||(24577190-24577289)
chr1 (11-103)||(6427425-6427516)
chr1 (8-104)||(51409981-51410080)
chr1 (8-39)||(1815281-1815312)
chr1 (49-104)||(6427313-6427367)
chr1 (8-39)||(18337353-18337384)
chr1 (8-39)||(40258937-40258968)
chr1 (8-39)||(47989521-47989552)
chr1 (9-39)||(31015067-31015097)
chr1 (49-86)||(398807-398844)
chr1 (49-86)||(5927382-5927419)
chr1 (8-37)||(6612175-6612204)
chr1 (8-37)||(19058860-19058889)
chr1 (8-37)||(21378604-21378633)
chr1 (49-86)||(40917731-40917768)
chr1 (49-86)||(48040504-48040541)
chr1 (49-105)||(48450629-48450690)
chr1 (76-105)||(48548049-48548078)
chr1 (49-85)||(2896163-2896199)
chr1 (76-104)||(10577822-10577850)
chr1 (8-36)||(24334709-24334737)
chr1 (76-104)||(25934572-25934600)
chr1 (49-89)||(29144400-29144440)
chr1 (49-104)||(37598793-37598849)
chr1 (76-104)||(38078743-38078771)
[»] chr8 (18 HSPs)
chr8 (12-106)||(36450762-36450853)
chr8 (49-104)||(31109560-31109615)
chr8 (8-86)||(22651956-22652031)
chr8 (8-86)||(29510308-29510383)
chr8 (50-103)||(22204603-22204655)
chr8 (8-39)||(4948676-4948707)
chr8 (8-39)||(25566865-25566896)
chr8 (8-39)||(40332215-40332246)
chr8 (70-104)||(5137484-5137518)
chr8 (8-86)||(24669413-24669488)
chr8 (49-83)||(25192389-25192423)
chr8 (49-86)||(13437006-13437043)
chr8 (10-39)||(18407743-18407772)
chr8 (76-104)||(3951616-3951644)
chr8 (49-89)||(5813569-5813609)
chr8 (76-104)||(20785546-20785574)
chr8 (76-104)||(24413647-24413675)
chr8 (11-39)||(30077394-30077422)
[»] chr4 (17 HSPs)
chr4 (8-102)||(30298910-30299002)
chr4 (8-102)||(30327778-30327870)
chr4 (8-103)||(12895120-12895211)
chr4 (8-86)||(23292990-23293065)
chr4 (8-104)||(29205408-29205499)
chr4 (8-104)||(49430982-49431081)
chr4 (8-103)||(12797342-12797438)
chr4 (50-105)||(24543941-24543997)
chr4 (8-79)||(42640513-42640584)
chr4 (8-86)||(21945483-21945558)
chr4 (76-105)||(22234954-22234983)
chr4 (76-104)||(4157102-4157130)
chr4 (52-104)||(7970483-7970535)
chr4 (8-36)||(16073421-16073449)
chr4 (76-104)||(20633429-20633457)
chr4 (11-39)||(28964255-28964283)
chr4 (49-102)||(35723427-35723484)
[»] scaffold0103 (1 HSPs)
scaffold0103 (12-93)||(51784-51862)
[»] chr3 (28 HSPs)
chr3 (49-104)||(40052295-40052349)
chr3 (8-104)||(26508067-26508165)
chr3 (49-104)||(33359722-33359778)
chr3 (8-103)||(20503429-20503520)
chr3 (49-89)||(10318076-10318116)
chr3 (8-86)||(28917981-28918056)
chr3 (49-86)||(3865598-3865635)
chr3 (8-104)||(28812477-28812570)
chr3 (8-104)||(34910279-34910372)
chr3 (49-100)||(6525722-6525773)
chr3 (11-101)||(14209079-14209165)
chr3 (8-39)||(25775533-25775564)
chr3 (49-104)||(37077320-37077375)
chr3 (70-104)||(13845580-13845614)
chr3 (8-86)||(14829670-14829744)
chr3 (76-105)||(750706-750735)
chr3 (62-103)||(1852600-1852641)
chr3 (49-86)||(10335328-10335365)
chr3 (49-105)||(14979137-14979198)
chr3 (51-104)||(22774114-22774167)
chr3 (49-86)||(26492247-26492284)
chr3 (10-39)||(35994744-35994773)
chr3 (9-37)||(4990972-4991000)
chr3 (76-104)||(14027959-14027987)
chr3 (49-89)||(21720741-21720781)
chr3 (76-104)||(23870622-23870650)
chr3 (9-37)||(35312080-35312108)
chr3 (76-104)||(45451523-45451551)
[»] chr7 (22 HSPs)
chr7 (51-105)||(15680770-15680824)
chr7 (50-104)||(7197340-7197394)
chr7 (49-103)||(25791616-25791670)
chr7 (8-105)||(18215190-18215284)
chr7 (49-84)||(12010022-12010057)
chr7 (8-86)||(5409840-5409915)
chr7 (8-86)||(24339622-24339697)
chr7 (8-105)||(26033465-26033557)
chr7 (49-86)||(24105658-24105695)
chr7 (49-105)||(11072259-11072315)
chr7 (49-105)||(26019673-26019729)
chr7 (49-105)||(32308081-32308137)
chr7 (8-39)||(18039023-18039054)
chr7 (8-39)||(21560527-21560558)
chr7 (8-86)||(11061080-11061155)
chr7 (49-102)||(11665482-11665536)
chr7 (70-104)||(19213773-19213807)
chr7 (8-86)||(27945021-27945096)
chr7 (10-86)||(13770671-13770744)
chr7 (8-37)||(21880178-21880207)
chr7 (50-103)||(37742486-37742539)
chr7 (76-104)||(9778452-9778480)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-105)||(23729-23825)
[»] scaffold0223 (1 HSPs)
scaffold0223 (11-86)||(20152-20224)
[»] scaffold0053 (1 HSPs)
scaffold0053 (49-86)||(8778-8815)
[»] scaffold0003 (1 HSPs)
scaffold0003 (49-86)||(241574-241611)
[»] scaffold0004 (2 HSPs)
scaffold0004 (8-79)||(123612-123683)
scaffold0004 (11-89)||(92784-92859)
[»] scaffold0021 (1 HSPs)
scaffold0021 (8-39)||(130506-130537)
[»] scaffold0306 (1 HSPs)
scaffold0306 (8-86)||(13380-13455)
[»] scaffold0152 (1 HSPs)
scaffold0152 (8-86)||(21872-21947)
[»] scaffold0116 (1 HSPs)
scaffold0116 (76-105)||(9841-9870)
[»] scaffold0083 (1 HSPs)
scaffold0083 (8-37)||(45534-45563)
[»] scaffold0049 (1 HSPs)
scaffold0049 (76-105)||(63708-63737)
[»] scaffold0019 (1 HSPs)
scaffold0019 (49-104)||(71679-71740)
[»] scaffold0018 (1 HSPs)
scaffold0018 (49-86)||(178861-178898)
[»] scaffold0007 (1 HSPs)
scaffold0007 (49-86)||(225310-225347)
[»] scaffold0171 (1 HSPs)
scaffold0171 (76-104)||(23371-23399)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-39)||(3856-3884)
[»] scaffold0086 (1 HSPs)
scaffold0086 (49-89)||(2900-2940)
[»] scaffold0027 (1 HSPs)
scaffold0027 (77-105)||(46625-46653)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 1694175 - 1694071
Alignment:
Q  113 tatagtcaaaagccacgtcgacattggagcttgattttcatcacattatttggaaaagtagtgtataagttttcattcattgaaatataacctaagttca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1694175 tatagtcaaaagccacgtcgacattggagcttgattttcatcacattatttggaaaagtagtgtataagttttcatt-attgaaatataacctaagttca 1694077  T
Q  213 caattg 218  Q
    ||||||    
T  1694076 caattg 1694071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 28152153 - 28152062
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  28152153 accgacacttgtaattacactgaattatgtgattttt----caaattattagctttgtcggcgtgtcagtgtccgtgtccatatccgtgcttcata 28152062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 17841593 - 17841688
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataggg 106  Q
    |||| |||||||||||||||| ||||||||||         |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  17841593 accgtcacttgtaattacactaaattatgtgatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcataggg 17841688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 17302609 - 17302518
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||| ||||||||||||         ||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||    
T  17302609 gacacttgtaattacattgaattatgtgattttttt--caaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatctgcgcttcatag 17302518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 1694051 - 1694000
Alignment:
Q  230 gctctaaaactgcacccgtaaaatcatcagattcaattccatctctttcatc 281  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||    
T  1694051 gctctaaaactgcatccataaaataatcagattcaattccatctctttcatc 1694000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 10770678 - 10770777
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcat 102  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| |||||  |||||||||||||     ||||||||||||||||||||||    
T  10770678 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatccgtgcttcat 10770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 16766752 - 16766677
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||| ||||    
T  16766752 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagctgtgtcggcgtgtcagtgtccatgtc 16766677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 12696376 - 12696304
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||| |         |||||||||||||||||| |||||||||||||||||||    
T  12696376 gacacttgtaattacactgaattatgtaatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtc 12696304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 8365523 - 8365598
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||| |||||||||||         ||||||||||| |||||| |||||||||||||||||||    
T  8365523 accgacacttgtaattacaccgaattatgtgatatttt---caaattattagttgtgtcggcgtgtcagtgtccgtgtc 8365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 9107374 - 9107449
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||| |||||         |||||||||||||||||| |||||| ||||||||||||    
T  9107374 accgacacttgtaattacactgaattttgtgatttttt---caaattattagctgtgtcggcgtgttagtgtccgtgtc 9107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 34595189 - 34595114
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| |||||| |||||||| ||||||||||    
T  34595189 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtc 34595114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 3398636 - 3398599
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3398636 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 3398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 9522946 - 9522915
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  9522946 accgacacttgtaattacactgaattatgtga 9522915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 9911532 - 9911563
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  9911532 accgacacttgtaattacactgaattatgtga 9911563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 10842549 - 10842494
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||| ||||| ||||||| |||||  ||||||| ||||||||||||||    
T  10842549 caaattattagcggtgtcggcgtgtccgtgtcaatgtccgtgtccgtgcttcatag 10842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 426518 - 426593
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||| | ||||||||||         |||||||||| ||||||| |||||||||||||||||||    
T  426518 accgacacttgtaattacatttaattatgtgatttttt---caaattattaactgtgtcggcgtgtcagtgtccgtgtc 426593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 7977834 - 7977909
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||||| |         |||||||||||||||||| |||||||||| ||| ||||    
T  7977834 accgacacttgtaattacactgaattatgtaa---ttttttcaaattattagctgtgtcggcgtgtcagtatccatgtc 7977909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 8776981 - 8777052
Alignment:
Q  12 acacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||| |||||         ||||||||||| |||||| |||||||||||||||||||    
T  8776981 acacttgtaattacactgaattttgtgatttttt---caaattattagttgtgtcggcgtgtcagtgtccgtgtc 8777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 17435215 - 17435162
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||| ||||  ||| ||||||||||||| ||||||||||||||||||    
T  17435215 aaattattagctatgtcgacgtatcagtgtccgtgt-cgtatccgtgcttcatag 17435162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 34225886 - 34225916
Alignment:
Q  74 cagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||||    
T  34225886 cagtgtccgtgtccgtatccgtgcttcatag 34225916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 7938088 - 7938059
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  7938088 gtgtccgtgtccgtatccgtgcttcatagg 7938059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 7938133 - 7938096
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  7938133 caaattattagctgtgtcggcgtgtcagtgtccatgtc 7938096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 9027195 - 9027158
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  9027195 caaattattagcggtgtcggcgtgtcagtgtccgtgtc 9027158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 28715350 - 28715321
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  28715350 accgacacttgtaattacactgaattatgt 28715321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 9658895 - 9658859
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtc 9658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 18367809 - 18367781
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  18367809 gtgtccgtgtccgtatccgtgcttcatag 18367781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 19147445 - 19147485
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    |||||||||||||||||| | |||||||||||||| |||||    
T  19147445 caaattattagctgtgtccgtgtgtcagtgtccgtatccgt 19147485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 31384972 - 31384944
Alignment:
Q  11 gacacttgtaattacactgaattatgtga 39  Q
    |||||||||||||||||||||||||||||    
T  31384972 gacacttgtaattacactgaattatgtga 31384944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 37559032 - 37558938
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||| ||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37559032 accgacacttgtaattacattgaattatgtgattttta---caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 37558938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 30404855 - 30404952
Alignment:
Q  9 ccgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccg-----tgtccgtatccgtgcttcata 103  Q
    |||||||||||||||||||||||||||||||         |||||||||| | ||||| |||||||||||||||     |||||||||||||||||||||    
T  30404855 ccgacacttgtaattacactgaattatgtga---ttttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcata 30404951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 18841017 - 18841117
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcat 102  Q
    ||||||||||||||||||||| |||||||| |         ||||||||||| ||||||||||||||||||||     ||||||||||| ||||||||||    
T  18841017 accgacacttgtaattacacttaattatgtaatttttt---caaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccgtatacgtgcttcat 18841113  T
Q  103 aggg 106  Q
    ||||    
T  18841114 aggg 18841117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 19536401 - 19536477
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| |||||| |||||||| ||||||||||    
T  19536401 accgacacttgtaattacactgaattatgtga--tttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtc 19536477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 21374706 - 21374780
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccg 88  Q
    ||||||||||||||||||||||||||| |         |||||||||||||||||| |||||| ||||||||||||||    
T  21374706 gacacttgtaattacactgaattatgtaatttttt---caaattattagctgtgtcggcgtgttagtgtccgtgtccg 21374780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 37419798 - 37419704
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatag 104  Q
    |||| ||||||||||||||||||||| |||||         ||||||||| ||  |||| ||||||||||||||| ||||||||||||||||||||||    
T  37419798 accggcacttgtaattacactgaattttgtgatttttt---caaattatttgccatgtcggcgtgtcagtgtccggtgtccgtatccgtgcttcatag 37419704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 39323316 - 39323226
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||||||||||||||||||||||||| |         |||||||||||| |||||  ||| ||||||||||||||||||| ||||||| ||||    
T  39323316 gacacttgtaattacactgaattatgtaattttgt---caaattattagcggtgtcgacgtttcagtgtccgtgtccgtattcgtgctttatag 39323226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 6940271 - 6940235
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6940271 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 6940235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 2438723 - 2438754
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  2438723 accgacacttgtaattacactgaattatgtga 2438754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 18422018 - 18421987
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  18422018 accgacacttgtaattacactgaattatgtga 18421987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 19580323 - 19580378
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||| ||||| | | || ||||||||||||||||||||||| ||||||||    
T  19580323 caaattattaactgtgacggtgtatcagtgtccgtgtccgtatccgtacttcatag 19580378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 24894405 - 24894370
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgt 85  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24894405 aaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 106
Target Start/End: Complemental strand, 27084259 - 27084228
Alignment:
Q  75 agtgtccgtgtccgtatccgtgcttcataggg 106  Q
    ||||||||||||||||||||||||||||||||    
T  27084259 agtgtccgtgtccgtatccgtgcttcataggg 27084228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 11223867 - 11223942
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||||| |         |||| ||||||||||||||||||||| |||||| ||||    
T  11223867 accgacacttgtaattacactgaattatgtta---ttttttcaaaatattagctgtgtcagcgtgtctgtgtccatgtc 11223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 14996227 - 14996303
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||| |||||| |||         |||||||||||||||||| || ||||||||||||||||    
T  14996227 accgacacttgtaattacactaaattatatgattttttt--caaattattagctgtgtcggcttgtcagtgtccgtgtc 14996303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 20539678 - 20539753
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||| |||||| |||         ||||||||||||||||||  ||||||||||||||||||    
T  20539678 accgacacttgtaattacactaaattatatgatttttt---caaattattagctgtgtcgacgtgtcagtgtccgtgtc 20539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 12940977 - 12941014
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  12940977 caaattattagttgtgtcaacgtgtcagtgtccgtgtc 12941014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 26769489 - 26769460
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  26769489 gtgtccgtgtccgtatccgtgcttcatagg 26769460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 27447088 - 27447117
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  27447088 gtgtccgtgtccgtatccgtgcttcatagg 27447117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 30717536 - 30717565
Alignment:
Q  10 cgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||    
T  30717536 cgacacttgtaattacactgaattatgtga 30717565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 41843444 - 41843403
Alignment:
Q  63 tgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  41843444 tgtcggcgtgtcagtgtccgtgttcatatccgtgcttcatag 41843403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 44770206 - 44770235
Alignment:
Q  75 agtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||||||||||||||||||||||||||||    
T  44770206 agtgtccgtgtccgtatccgtgcttcatag 44770235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 21374781 - 21374809
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  21374781 gtgtccgtgtccgtatccgtgcttcatag 21374809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 21624282 - 21624246
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 21624246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 21624322 - 21624294
Alignment:
Q  8 accgacacttgtaattacactgaattatg 36  Q
    |||||||||||||||||||||||||||||    
T  21624322 accgacacttgtaattacactgaattatg 21624294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 27460043 - 27460011
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtcc 81  Q
    |||||||||||||||||| ||||||||||||||    
T  27460043 caaattattagctgtgtcggcgtgtcagtgtcc 27460011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 33153476 - 33153448
Alignment:
Q  11 gacacttgtaattacactgaattatgtga 39  Q
    |||||||||||||||||||||||||||||    
T  33153476 gacacttgtaattacactgaattatgtga 33153448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 14674323 - 14674231
Alignment:
Q  9 ccgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||| ||||||||||         |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  14674323 ccgacacttgtaattacactaaattatgtgatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 39698593 - 39698518
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| |||||    
T  39698593 gacacttgtaattacactgaattatgtgatttttt---caaattattagctgtgtcagcgtgtcagtgtccgtatccgt 39698518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 43001851 - 43001762
Alignment:
Q  12 acacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||| |         |||||||||||| |||||  | ||||||||||||||||||||||||||||||||||    
T  43001851 acacttgtaattacactgaattatgtaatttttt---caaattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcatag 43001762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 21191060 - 21191135
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||| || ||||||||||||||||    
T  21191060 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagctgtgtcggcatgtcagtgtccgtgtc 21191135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 22013431 - 22013394
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 22013394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 6035500 - 6035444
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||||| ||||| |||||||||||||  ||||  |||||||||||||||||    
T  6035500 caaattattagcggtgtcggcgtgtcagtgtctttgtctatatccgtgcttcatagg 6035444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 21522766 - 21522730
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 21522730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 21533332 - 21533296
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 21533296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 6247677 - 6247646
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  6247677 accgacacttgtaattacactgaattatgtga 6247646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 7218271 - 7218302
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  7218271 accgacacttgtaattacactgaattatgtga 7218302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 15884043 - 15884012
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  15884043 accgacacttgtaattacactgaattatgtga 15884012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 21351909 - 21351940
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  21351909 accgacacttgtaattacactgaattatgtga 21351940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 15382534 - 15382457
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| |||||||||| |||         |||||||||||||||||| |||||||| ||||||||||    
T  15382534 accgacacttgtaattatactgaattatatgatttttttt-caaattattagctgtgtcggcgtgtcattgtccgtgtc 15382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 3966520 - 3966467
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttca 101  Q
    |||||||||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  3966520 caaattattagcggtgtcggcatgtcagtgtccagtgtccgtgtccgtgcttca 3966467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 15382449 - 15382420
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  15382449 gtgtccgtgtccgtatccgtgcttcatagg 15382420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 19552585 - 19552622
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  19552585 caaattattaactgtgtcggcgtgtcagtgtccgtgtc 19552622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 19579756 - 19579682
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgt 85  Q
    |||||||||||||||| |||| ||||||||||         |||||||||||||||||| |||| |||||||||||||    
T  19579756 accgacacttgtaattgcactaaattatgtgattttct---caaattattagctgtgtcggcgtatcagtgtccgtgt 19579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 21542085 - 21542056
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  21542085 accgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 21576751 - 21576780
Alignment:
Q  10 cgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||    
T  21576751 cgacacttgtaattacactgaattatgtga 21576780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 24906305 - 24906334
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  24906305 accgacacttgtaattacactgaattatgt 24906334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 36642804 - 36642841
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  36642804 caaattattaactgtgtcggcgtgtcagtgtccgtgtc 36642841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 6770559 - 6770523
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||| |||||||| |||||||||||||||||    
T  6770559 aaattattagttgtgtcagtgtgtcagtgtccgtgtc 6770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 15410491 - 15410527
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtc 15410527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 41995445 - 41995417
Alignment:
Q  74 cagtgtccgtgtccgtatccgtgcttcat 102  Q
    |||||||||||||||||||||||||||||    
T  41995445 cagtgtccgtgtccgtatccgtgcttcat 41995417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 46348387 - 46348479
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    ||||||||||||||||||||| |||||| |||         |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46348387 accgacacttgtaattacactaaattatatgatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcata 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 18556498 - 18556548
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgctt 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18556498 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 18556548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 1486713 - 1486788
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||| ||||||||    
T  1486713 accgacacttataattacactgaattatgtgatttttt---caaattattagctgtgtcagcgtgtcagtatccgtgtc 1486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 42359453 - 42359527
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgt 85  Q
    |||||||||||||||||||||||||| |||||         ||||||||||| |||||||||||||||||||||||||    
T  42359453 accgacacttgtaattacactgaattttgtgatttttt---caaattattagatgtgtcagcgtgtcagtgtccgtgt 42359527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 14359529 - 14359624
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||||||||||| ||||||||||         |||||||||||||||||| ||||||| |||||     |||||||||||||||||||||||||    
T  14359529 gacacttgtaattacactaaattatgtgattttt----caaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcatagg 14359624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 24577190 - 24577289
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtg------tccgtgtccgtatccgtgcttca 101  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||| |||      || ||||||||||||||||||||    
T  24577190 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagttgtgtcagcgtgtccgtgtcgtgttcagtgtccgtatccgtgcttca 24577286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 6427516 - 6427425
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    |||||||||| ||||| ||||||||||||         ||||||||||| |||||| || ||||||||| ||||||||||||| |||||||||    
T  6427516 gacacttgtagttacattgaattatgtgatttttttttcaaattattagttgtgtcggcatgtcagtgt-cgtgtccgtatccatgcttcata 6427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 51410080 - 51409981
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtc-----agtgtccgtgtccgtatccgtgcttcat 102  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| |||||| || ||||      |||||||||||||||||||||||||||    
T  51410080 accgacacttgtaattacactgaattatgtga--tttttttcaaattattagatgtgtcggcatgtccgttttgtgtccgtgtccgtatccgtgcttcat 51409983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 1815312 - 1815281
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  1815312 accgacacttgtaattacactgaattatgtga 1815281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 6427367 - 6427313
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||    
T  6427367 caaattattagcggtgttggcgtgtcagtgtccgtg-ccgtgtccgtgcttcatag 6427313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 18337384 - 18337353
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  18337384 accgacacttgtaattacactgaattatgtga 18337353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 40258937 - 40258968
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  40258937 accgacacttgtaattacactgaattatgtga 40258968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 47989552 - 47989521
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  47989552 accgacacttgtaattacactgaattatgtga 47989521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 31015097 - 31015067
Alignment:
Q  9 ccgacacttgtaattacactgaattatgtga 39  Q
    |||||||||||||||||||||||||||||||    
T  31015097 ccgacacttgtaattacactgaattatgtga 31015067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 398807 - 398844
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  398807 caaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 5927382 - 5927419
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  5927382 caaattattagcagtgttagcgtgtcagtgtccgtgtc 5927419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 6612175 - 6612204
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  6612175 accgacacttgtaattacactgaattatgt 6612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 19058860 - 19058889
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  19058860 accgacacttgtaattacactgaattatgt 19058889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 21378633 - 21378604
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  21378633 accgacacttgtaattacactgaattatgt 21378604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 40917768 - 40917731
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  40917768 caaattattagctgtgtcggcgtgtcagtatccgtgtc 40917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 48040504 - 48040541
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  48040504 caaattattatctgtgtcggcgtgtcagtgtccgtgtc 48040541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 48450629 - 48450690
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtg-----tccgtatccgtgcttcatagg 105  Q
    |||||||||||||||||  |||||||||||||||||     ||||||||| |||||||||||    
T  48450629 caaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccgtatccatgcttcatagg 48450690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 48548049 - 48548078
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  48548049 gtgtccgtgtccgtatccgtgcttcatagg 48548078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 2896163 - 2896199
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgt 85  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  2896163 caaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 10577822 - 10577850
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  10577822 gtgtccgtgtccgtatccgtgcttcatag 10577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 24334709 - 24334737
Alignment:
Q  8 accgacacttgtaattacactgaattatg 36  Q
    |||||||||||||||||||||||||||||    
T  24334709 accgacacttgtaattacactgaattatg 24334737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 25934600 - 25934572
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  25934600 gtgtccgtgtccgtatccgtgcttcatag 25934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 29144400 - 29144440
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  29144400 caaattattagctgtgtcggcgtatcagtgtcagtgtccgt 29144440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 37598849 - 37598793
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcatag 104  Q
    ||||||||||| |||||| |||||||||||||| ||||| || ||||||| ||||||    
T  37598849 caaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgtgcgtcatag 37598793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 38078743 - 38078771
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  38078743 gtgtccgtgtccgtatccgtgcttcatag 38078771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 36450762 - 36450853
Alignment:
Q  12 acacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataggg 106  Q
    |||||||||||||||||||||| |||||         ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  36450762 acacttgtaattacactgaattctgtgatttttt---caaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcataggg 36450853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 31109560 - 31109615
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||| | ||||| |||||||||||||||||||| |||| |||||||||||    
T  31109560 caaattattaacggtgtcggcgtgtcagtgtccgtgtccatatcagtgcttcatag 31109615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 22652031 - 22651956
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| | ||||||||||||         |||||||||||||||||| |||||||||||||||||||    
T  22652031 accgacacttgtaattatattgaattatgtgatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 29510308 - 29510383
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| |||||||| |||||         |||||||||||||||||| |||||||||||||||||||    
T  29510308 accgacacttgtaattatactgaattttgtgatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtc 29510383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 22204655 - 22204603
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||    
T  22204655 aaattattagttgtgtcggcgtgtcagtgtccgtatccgtatcc-tgcttcata 22204603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 4948707 - 4948676
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  4948707 accgacacttgtaattacactgaattatgtga 4948676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 25566896 - 25566865
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  25566896 accgacacttgtaattacactgaattatgtga 25566865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 40332246 - 40332215
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  40332246 accgacacttgtaattacactgaattatgtga 40332215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 5137484 - 5137518
Alignment:
Q  70 gtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||| |||||||||||||||||||||||||||||    
T  5137484 gtgtccgtgtccgtgtccgtatccgtgcttcatag 5137518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 24669488 - 24669413
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||||| |         |||||||||| | ||||||||||||||||||| |||||    
T  24669488 accgacacttgtaattacactgaattatgtaa---tttcctcaaattattaacggtgtcagcgtgtcagtgtctgtgtc 24669413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 25192389 - 25192423
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgt 83  Q
    |||||||||||||||||| ||||||||||||||||    
T  25192389 caaattattagctgtgtcggcgtgtcagtgtccgt 25192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 13437006 - 13437043
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  13437006 caaattattagctgtgtcggcgtgtcagtgtccatgtc 13437043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 18407772 - 18407743
Alignment:
Q  10 cgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||    
T  18407772 cgacacttgtaattacactgaattatgtga 18407743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 3951616 - 3951644
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  3951616 gtgtccgtgtccgtatccgtgcttcatag 3951644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 5813609 - 5813569
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  5813609 caaattattagctgtgtcggcgtgtccgtgtccgtatccgt 5813569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 20785546 - 20785574
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  20785546 gtgtccgtgtccgtatccgtgcttcatag 20785574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 24413647 - 24413675
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  24413647 gtgtccgtgtccgtatccgtgcttcatag 24413675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 30077394 - 30077422
Alignment:
Q  11 gacacttgtaattacactgaattatgtga 39  Q
    |||||||||||||||||||||||||||||    
T  30077394 gacacttgtaattacactgaattatgtga 30077422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 30299002 - 30298910
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcat 102  Q
    |||||||||||||||||||||||||||||| |         |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30299002 accgacacttgtaattacactgaattatgtcattttttt--caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 30327870 - 30327778
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcat 102  Q
    |||||||||||||||||||||||||||||| |         |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30327870 accgacacttgtaattacactgaattatgtcattttttt--caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 12895120 - 12895211
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    ||||||||||||||||||  ||||||||||||         ||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||    
T  12895120 accgacacttgtaattactttgaattatgtgatttttt---caaattattagctgtttcggcgtgtc-gtgtccgtgtccgtatctgtgcttcata 12895211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 23292990 - 23293065
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| ||||||||||||||         |||||||||||||||||| |||||||| ||||||||||    
T  23292990 accgacacttgtaattatactgaattatgtgatttttt---caaattattagctgtgtcggcgtgtcattgtccgtgtc 23293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 29205499 - 29205408
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||||||||||||||||||||||||||||||         |||||||||||| ||||    ||||| |||||| ||||||||||||||||||||||    
T  29205499 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagccgtgt--tggtgtccgtgtccatgtccgtatccgtgcttcatag 29205408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 49431081 - 49430982
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcat 102  Q
    |||||||||| |||||||||||||||||||||         |||||||||||||||||| |||||||| ||||     ||||||||| ||||||||||||    
T  49431081 accgacacttttaattacactgaattatgtgattttttt--caaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgtgcttcat 49430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 12797342 - 12797438
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtg-----tccgtatccgtgcttcat 102  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| | || | |||||||||||||||||     ||||||||||||||||||    
T  12797342 accgacacttgtaattacactgaattatgtga----tttttcaaattattagttttgccggcgtgtcagtgtccgtgtcgtatccgtatccgtgcttcat 12797437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 24543997 - 24543941
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtc-cgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||| |||||| |||||||||||||  |||||||||||| |||||||||||    
T  24543997 aaattattagttgtgtcggcgtgtcagtgtctggtgtccgtatccatgcttcatagg 24543941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 42640584 - 42640513
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgt 79  Q
    ||||||||||||||||||||||||||||||||         |||||||| ||||||||| ||||||| ||||    
T  42640584 accgacacttgtaattacactgaattatgtgatttttttttcaaattatcagctgtgtcggcgtgtccgtgt 42640513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 21945558 - 21945483
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||||| |         |||||||||||||||||| || |||||||||| |||||    
T  21945558 accgacacttgtaattacactgaattatgtca---ttttttcaaattattagctgtgtcggcatgtcagtgtctgtgtc 21945483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 22234954 - 22234983
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  22234954 gtgtccgtgtccgtatccgtgcttcatagg 22234983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 4157130 - 4157102
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  4157130 gtgtccgtgtccgtatccgtgcttcatag 4157102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 7970535 - 7970483
Alignment:
Q  52 attattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||| || |||||||| |||||||||| ||||||| ||| |||||||||||    
T  7970535 attattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 7970483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 16073449 - 16073421
Alignment:
Q  8 accgacacttgtaattacactgaattatg 36  Q
    |||||||||||||||||||||||||||||    
T  16073449 accgacacttgtaattacactgaattatg 16073421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 20633457 - 20633429
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  20633457 gtgtccgtgtccgtatccgtgcttcatag 20633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 28964255 - 28964283
Alignment:
Q  11 gacacttgtaattacactgaattatgtga 39  Q
    |||||||||||||||||||||||||||||    
T  28964255 gacacttgtaattacactgaattatgtga 28964283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 35723427 - 35723484
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtc----cgtgtccgtatccgtgcttcat 102  Q
    |||||||||||| ||||| |||||||||||||    |||||||||||| |||||||||    
T  35723427 caaattattagcggtgtcggcgtgtcagtgtcatgtcgtgtccgtatcggtgcttcat 35723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 51862 - 51784
Alignment:
Q  12 acacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatcc 93  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||||    
T  51862 acacttgtaattacactgaattatgtgatttttt---caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcc 51784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 40052349 - 40052295
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  40052349 caaattattagctgtgtcggcgtgtcagtgt-cgtgtccgtatccgtgcttcatag 40052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 26508165 - 26508067
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcat 102  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||     ||||||||||||||| ||||||    
T  26508165 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccgtatccgttcttcat 26508069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 33359778 - 33359722
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtcc-gtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  33359778 caaattattagctgtgtcagcgtgtcagtgtctgtgtccggtgtccgtgcttcatag 33359722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 20503520 - 20503429
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    |||||||||||||||||||||||||||||| |         ||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||    
T  20503520 accgacacttgtaattacactgaattatgtcatttttt---caaattatttgttgtgtcggcgtgtcagtgtc-gtgtccgtatccgtgcttcata 20503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 10318076 - 10318116
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10318076 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 10318116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 28918056 - 28917981
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||| |||| |||||||||| ||||||||    
T  28918056 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagctatgtcggcgtgtcagtttccgtgtc 28917981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 3865598 - 3865635
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3865598 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 3865635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 28812570 - 28812477
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgt-gtccgtatccgtgcttcatag 104  Q
    |||||||||||||| |||||||||||||||||         ||||||||||| |||||| ||||||| |||||||| ||| |||||||||||||||||    
T  28812570 accgacacttgtaactacactgaattatgtgatttctt---caaattattagttgtgtcggcgtgtc-gtgtccgttgtctgtatccgtgcttcatag 28812477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 34910372 - 34910279
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatag 104  Q
    |||||| |||||||||||||||||||||||||         ||||||||||| |||||| ||||||| ||||| | ||||||||||||||||||||||    
T  34910372 accgactcttgtaattacactgaattatgtgatttttt---caaattattagttgtgtcggcgtgtc-gtgtctggtgtccgtatccgtgcttcatag 34910279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 6525722 - 6525773
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttc 100  Q
    |||||||||||| |||||  | ||||||||| ||||||||||||||||||||    
T  6525722 caaattattagcggtgtcgacatgtcagtgtacgtgtccgtatccgtgcttc 6525773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 14209165 - 14209079
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttca 101  Q
    |||||||||||||||||||||||||||||          |||||||||| |||||| ||||||| ||||| ||||||| ||||||||||||    
T  14209165 gacacttgtaattacactgaattatgtgatttttta---aaattattagttgtgtcggcgtgtc-gtgtctgtgtccgcatccgtgcttca 14209079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 25775564 - 25775533
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  25775564 accgacacttgtaattacactgaattatgtga 25775533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 37077375 - 37077320
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||| | ||||| |||||||| ||||||||||  ||||||||||||||||    
T  37077375 caaattattatcggtgtcggcgtgtcactgtccgtgtctttatccgtgcttcatag 37077320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 13845580 - 13845614
Alignment:
Q  70 gtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||| |||||||||||||||||||||||||||||    
T  13845580 gtgtcggtgtccgtgtccgtatccgtgcttcatag 13845614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 14829744 - 14829670
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||  ||||||||||||         |||||||||||||||||| ||||||||||||| |||||    
T  14829744 accgacacttgtaattaccatgaattatgtgattttt----caaattattagctgtgtcggcgtgtcagtgtctgtgtc 14829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 750706 - 750735
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  750706 gtgtccgtgtccgtatccgtgcttcatagg 750735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 1852641 - 1852600
Alignment:
Q  62 gtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  1852641 gtgtcagcgtgtccgtgtccgtatctgtatccgtgcttcata 1852600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 10335328 - 10335365
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  10335328 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 10335365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 14979198 - 14979137
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtcc-----gtgtccgtatccgtgcttcatagg 105  Q
    |||||||||||||||||| ||||| || |||||     ||||||||||||||||||||||||    
T  14979198 caaattattagctgtgtcggcgtgccattgtccttgtcgtgtccgtatccgtgcttcatagg 14979137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 22774114 - 22774167
Alignment:
Q  51 aattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||  |||||  |||||| ||||| |||||||||||||||||||||||    
T  22774114 aattattagtggtgtcgacgtgtctgtgtctgtgtccgtatccgtgcttcatag 22774167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 26492247 - 26492284
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  26492247 caaattattagctctgtcggcgtgtcagtgtccgtgtc 26492284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 35994744 - 35994773
Alignment:
Q  10 cgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||    
T  35994744 cgacacttgtaattacactgaattatgtga 35994773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 4990972 - 4991000
Alignment:
Q  9 ccgacacttgtaattacactgaattatgt 37  Q
    |||||||||||||||||||||||||||||    
T  4990972 ccgacacttgtaattacactgaattatgt 4991000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 14027987 - 14027959
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  14027987 gtgtccgtgtccgtatccgtgcttcatag 14027959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 21720781 - 21720741
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    |||||||||| | ||||| ||||||||||||||||||||||    
T  21720781 caaattattatcggtgtcggcgtgtcagtgtccgtgtccgt 21720741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 23870622 - 23870650
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  23870622 gtgtccgtgtccgtatccgtgcttcatag 23870650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 35312108 - 35312080
Alignment:
Q  9 ccgacacttgtaattacactgaattatgt 37  Q
    |||||||||||||||||||||||||||||    
T  35312108 ccgacacttgtaattacactgaattatgt 35312080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 45451551 - 45451523
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  45451551 gtgtccgtgtccgtatccgtgcttcatag 45451523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 15680824 - 15680770
Alignment:
Q  51 aattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  15680824 aattattagctatgtcggcgtgtcagtgtccatgtccgtatccgtgcttcatagg 15680770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 7197340 - 7197394
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||    
T  7197340 aaattattagctgtgtcggcgtgtcaatgtctgtgttcgtatccgtgcttcatag 7197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 25791670 - 25791616
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  25791670 caaataattagcggtgtcggcgtgtcagtgtctgtgtccgtatccgtgcttcata 25791616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 18215190 - 18215284
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||||||| ||||||| |||||||||         |||||||||||||| ||| |||||| |||||||||||| | ||||||||||||||||    
T  18215190 accgacacttgtaactacactgcattatgtgatttttt---caaattattagctgcgtcggcgtgttagtgtccgtgtctgcatccgtgcttcatagg 18215284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 12010022 - 12010057
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtg 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  12010022 caaattattagctgtgtcagcgtgtcagtgtccgtg 12010057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 5409840 - 5409915
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||| |||||||||||||||         ||||||||||||||| ||||||||||||||||| ||||    
T  5409840 accgacacttgtaattgcactgaattatgtgatttttt---caaattattagctgtatcagcgtgtcagtgtccatgtc 5409915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 24339697 - 24339622
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||| ||||| ||||    
T  24339697 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagctgtgtcggcgtgtcaatgtccatgtc 24339622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 26033465 - 26033557
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||| ||||  ||||| ||||| || |||||||||||| ||||||||    
T  26033465 accgacacttgtaattacactgaattatgtga---ttttttcaaattattagctgcgtca--gtgtccgtgtctgtatccgtatccgtgattcatagg 26033557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 24105695 - 24105658
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||||||||    
T  24105695 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 24105658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 11072315 - 11072259
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||| | ||||| ||||||| |||| ||||||||||||| |||||||||||    
T  11072315 caaattattatcggtgtcggcgtgtctgtgttcgtgtccgtatccatgcttcatagg 11072259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 26019673 - 26019729
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||| |||| ||| | |||||||||  |||||||||||||||||||||||||||    
T  26019673 caaattactagcggtgccggcgtgtcaggatccgtgtccgtatccgtgcttcatagg 26019729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 32308137 - 32308081
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||||| ||||| |||||||||||||| ||| |||||  ||||||||||||    
T  32308137 caaattattagcggtgtcggcgtgtcagtgtccatgttcgtatttgtgcttcatagg 32308081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 18039054 - 18039023
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  18039054 accgacacttgtaattacactgaattatgtga 18039023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 21560558 - 21560527
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  21560558 accgacacttgtaattacactgaattatgtga 21560527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 11061080 - 11061155
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||||||||| ||| ||||||||||         |||||||||||||||||| | |||||||||||||||||    
T  11061080 accgacacttgtaattatactaaattatgtgatttttt---caaattattagctgtgtcggtgtgtcagtgtccgtgtc 11061155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 11665482 - 11665536
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcat 102  Q
    ||||||||||| ||||||||||||||| | ||| |||||||||||||| ||||||    
T  11665482 caaattattagttgtgtcagcgtgtcaatatccagtgtccgtatccgttcttcat 11665536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 19213807 - 19213773
Alignment:
Q  70 gtgtcagtgtccgtgtccgtatccgtgcttcatag 104  Q
    ||||||||||||||||||| |||||||||||||||    
T  19213807 gtgtcagtgtccgtgtccgcatccgtgcttcatag 19213773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 27945096 - 27945021
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||||| |         |||||||||||  ||||| |||||||||||||||||||    
T  27945096 accgacacttgtaattacactgaattatgtaa---ttttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtc 27945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 13770744 - 13770671
Alignment:
Q  10 cgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||| |          ||||||||||||||||| |||| ||||||||||||||    
T  13770744 cgacacttgtaattacactgaattatgtaattttttt---aaattattagctgtgtcggcgtatcagtgtccgtgtc 13770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 21880207 - 21880178
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  21880207 accgacacttgtaattacactgaattatgt 21880178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 37742539 - 37742486
Alignment:
Q  50 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 103  Q
    ||||||||||  ||||| ||||| ||||||||||||| ||||||||| ||||||    
T  37742539 aaattattagtggtgtcggcgtggcagtgtccgtgtctgtatccgtgtttcata 37742486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 9778480 - 9778452
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  9778480 gtgtccgtgtccgtatccgtgcttcatag 9778452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 23825 - 23729
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||||         |||||||||| ||||| ||| |||||||||||| |||| |||||||||| ||||||||    
T  23825 accgacacttgtaattacactgaattatgtga--tttttttcaaattattaactgtgacagtgtgtcagtgtccggtgttcgtatccgtgtttcatagg 23729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 20224 - 20152
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||| |||||||| ||||||||||    
T  20224 gacacttgtaattacactgaattatgtgatttttt---caaattattagctgtgtcggcgtgtcattgtccgtgtc 20152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 8815 - 8778
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8815 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 241611 - 241574
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||||||||||| |||||||||||||||||||    
T  241611 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 241574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 123683 - 123612
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgt 79  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||  ||||||||||||    
T  123683 accgacacttgtaattacactgaattatgtgattctttttttaaattattagctgtgttggcgtgtcagtgt 123612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 92859 - 92784
Alignment:
Q  11 gacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    ||||||||||||||||||||||||||| |         |||||||||||| ||||| |||||||||||||||| |||||    
T  92859 gacacttgtaattacactgaattatgtaattttct---caaattattagcggtgtcggcgtgtcagtgtccgtatccgt 92784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 130537 - 130506
Alignment:
Q  8 accgacacttgtaattacactgaattatgtga 39  Q
    ||||||||||||||||||||||||||||||||    
T  130537 accgacacttgtaattacactgaattatgtga 130506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 13455 - 13380
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||| ||||||||| |||||||||||||||         ||||||||||| |||||| |||||||||||||||||||    
T  13455 accgacccttgtaattgcactgaattatgtgattttct---caaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 21872 - 21947
Alignment:
Q  8 accgacacttgtaattacactgaattatgtgannnnnnnnncaaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||| ||||||||| |||||||||||||||         ||||||||||| |||||| |||||||||||||||||||    
T  21872 accgacccttgtaattgcactgaattatgtgattttct---caaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 9870 - 9841
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  9870 gtgtccgtgtccgtatccgtgcttcatagg 9841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 45534 - 45563
Alignment:
Q  8 accgacacttgtaattacactgaattatgt 37  Q
    ||||||||||||||||||||||||||||||    
T  45534 accgacacttgtaattacactgaattatgt 45563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 63737 - 63708
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatagg 105  Q
    ||||||||||||||||||||||||||||||    
T  63737 gtgtccgtgtccgtatccgtgcttcatagg 63708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 71740 - 71679
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtc-----cg-tgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||| |||||||||||||     || ||||||||||||||||||||||    
T  71740 caaattattagctgtgtcggcgtgtcagtgtcgtgtccgatgtccgtatccgtgcttcatag 71679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 178861 - 178898
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  178861 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 178898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 225310 - 225347
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 86  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  225310 caaattattatctgtgtcggcgtgtcagtgtccgtgtc 225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 23399 - 23371
Alignment:
Q  76 gtgtccgtgtccgtatccgtgcttcatag 104  Q
    |||||||||||||||||||||||||||||    
T  23399 gtgtccgtgtccgtatccgtgcttcatag 23371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 3856 - 3884
Alignment:
Q  11 gacacttgtaattacactgaattatgtga 39  Q
    |||||||||||||||||||||||||||||    
T  3856 gacacttgtaattacactgaattatgtga 3884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 2940 - 2900
Alignment:
Q  49 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 89  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  2940 caaattattagctatgttagcgtgtcagtgtccgtatccgt 2900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 46653 - 46625
Alignment:
Q  77 tgtccgtgtccgtatccgtgcttcatagg 105  Q
    |||||||||||||||||||||||||||||    
T  46653 tgtccgtgtccgtatccgtgcttcatagg 46625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University