View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552-Insertion-15 (Length: 355)
Name: NF5552-Insertion-15
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552-Insertion-15 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 61 - 355
Target Start/End: Complemental strand, 54305514 - 54305220
Alignment:
| Q |
61 |
gaatacgcaaataatcaaatgacacgcaaccaattaaacataaatttgagtaaaactttccaagtatctttcaattataggataactcttagatgattaa |
160 |
Q |
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| T |
54305514 |
gaatacgcaaataatcaaatgacacacaaccaattaaacataaatttgagtaaaactttcaaagtatctttcaattataggataactcttagatgattaa |
54305415 |
T |
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| Q |
161 |
ccttgtcaccacattcaaaatataaatttcccaaaacacaaaatcacatgcagaatcttgaatgaaccttccgagaaccgatttttaaaactgtagctgg |
260 |
Q |
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| T |
54305414 |
gcttgtcaccacattcaaaatataaatttcccaaaacacaaaatcacatgcagaatcttgaatgaaccttccgtgaaccgatttttaaaactgtagctgg |
54305315 |
T |
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| Q |
261 |
taaatttgaagctttgaaaccttacttcttcttcgtccggcaatgatgtggattatcccaccggtgattttcgatttccttcccccactttggat |
355 |
Q |
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| T |
54305314 |
taaatttgaagctttgaaaccttacttcttcttcgtccggcaatgatgtggattatcccaccggtgatttttgatttccttcccccactttggat |
54305220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 54299965 - 54299795
Alignment:
| Q |
15 |
ccactgtattgcaaaaagcattttgaagatctctaactcaaccgaaga-----atacgcaaataatcaaatgacacgcaaccaattaaacataaatttga |
109 |
Q |
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| T |
54299965 |
ccactgtattgcaaaaagtattttgaagatctctaactcaaccgtataggcaaatacacaaataatcacacgacacacaaccaattaagcataaatttga |
54299866 |
T |
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| Q |
110 |
gtaaaactttccaagtatctttcaattatagga-taactcttagatgattaaccttgtcaccacattcaaa |
179 |
Q |
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| T |
54299865 |
gtaaaattttcctagtatctttcaattttatgaggaactgttagataatcaagcttgtcaccacattcaaa |
54299795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 54298825 - 54298755
Alignment:
| Q |
202 |
aatcacatgcagaatcttgaatgaaccttccgagaaccgatttttaaaactgtagctggtaaatttgaagc |
272 |
Q |
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| T |
54298825 |
aatcacatgcagaatcttgaatgaaccttccatgaaccgattttcaaacgtgtagctgggaaatttgaagc |
54298755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 54286096 - 54286001
Alignment:
| Q |
177 |
aaaatataaatttcccaaaacacaaaatcacatgcagaatcttgaatgaaccttccgagaaccgatttttaaaactgtagctggtaaatttgaagc |
272 |
Q |
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| T |
54286096 |
aaaacataaatttcccaaaacacaaaaccacgtgcagaatctcgaacgtacctcccatgaaccaatttttaaatgtgtagctgggaaatttgaagc |
54286001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 46868268 - 46868360
Alignment:
| Q |
181 |
tataaatttcccaaaac-acaaaatcacatgcagaatcttgaatgaaccttccgagaaccgatttttaaaactgtagctggtaaatttgaagc |
272 |
Q |
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| T |
46868268 |
tataaatttctcaaaaatacaaaatcacatgcagaatcttgaatgaacataccatgaaccgatttttaaaagtgtagttaagaaatttgaagc |
46868360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 54306076 - 54306039
Alignment:
| Q |
23 |
ttgcaaaaagcattttgaagatctctaactcaaccgaa |
60 |
Q |
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| T |
54306076 |
ttgcaaaaagcattttgaagatctctaactcaaccgaa |
54306039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 62369 - 62464
Alignment:
| Q |
178 |
aaatataaatttccca-aaacacaaaatcacatgcagaatcttgaatgaaccttccgagaaccgatttttaaaactgtagctggtaaatttgaagc |
272 |
Q |
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| T |
62369 |
aaatataaattttccataaacacaaaaacacatgcagaattttgaataaacctttcatgaactgatttttaaaagtgtagctggaaaatttaaagc |
62464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 36384391 - 36384320
Alignment:
| Q |
200 |
aaaatcacatgcagaatcttgaatgaaccttccgagaaccgatttttaaaactgtagctggtaaatttgaag |
271 |
Q |
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| T |
36384391 |
aaaatcgcatggagaatcttgaatgaaccttccatgaacggatttttaaaagtgtagctcggaaatttgaag |
36384320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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