View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5552-Insertion-4 (Length: 780)

Name: NF5552-Insertion-4
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5552-Insertion-4
NF5552-Insertion-4
[»] chr8 (4 HSPs)
chr8 (8-443)||(40872356-40872790)
chr8 (524-777)||(40872875-40873126)
chr8 (8-70)||(40875454-40875516)
chr8 (574-623)||(13129717-13129766)
[»] chr3 (5 HSPs)
chr3 (532-627)||(4844485-4844580)
chr3 (532-627)||(4870181-4870276)
chr3 (574-639)||(30715791-30715855)
chr3 (525-627)||(30232330-30232432)
chr3 (525-618)||(46518628-46518721)
[»] chr7 (3 HSPs)
chr7 (525-639)||(5273552-5273666)
chr7 (525-637)||(38374563-38374675)
chr7 (566-627)||(279928-279989)
[»] chr1 (3 HSPs)
chr1 (525-627)||(51814494-51814596)
chr1 (574-628)||(45266883-45266937)
chr1 (525-618)||(8177165-8177258)
[»] chr2 (4 HSPs)
chr2 (526-623)||(16918556-16918653)
chr2 (525-639)||(23230567-23230680)
chr2 (525-627)||(42327369-42327471)
chr2 (525-627)||(42602554-42602656)
[»] chr4 (4 HSPs)
chr4 (524-627)||(28635695-28635798)
chr4 (564-639)||(46295136-46295211)
chr4 (574-639)||(2732043-2732108)
chr4 (574-639)||(51969066-51969131)
[»] chr5 (1 HSPs)
chr5 (524-618)||(7918452-7918546)
[»] chr6 (1 HSPs)
chr6 (574-639)||(24333987-24334052)


Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 40872356 - 40872790
Alignment:
Q  8 gcccaaacttgacgtatgatgattggcttttccttcagctggttcattttaaattgatcttgattgaactcttaattttgaagacaaagaagtataaaga 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||    
T  40872356 gcccaaacttgacggatgatgattggcttttccttcagctggttcattttaaattgatctcgattcaagtcttaattttgaagacaaagaagtataaaga 40872455  T
Q  108 aagaaggctctggaaatcaatacttgatttgtttgtgtatgattatgagaagtgaatagatattta------------tattaagaagagtaaacaaaca 195  Q
    ||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||            ||||||||||||||||||||||    
T  40872456 aagaaggctctggaaatcaa----------gtttgtgtatgattatgagaagagaatagatatttagggagagttttatattaagaagagtaaacaaaca 40872545  T
Q  196 cacacggcagagatagatattgcttggaaagtggtaacgtatgtgttaattaaagacgtgtgttatttgttaatacatgacataagtgtgtcttttttgg 295  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40872546 cacacggcagagata----ttgcttggaaagtggtaacgtatgtgttaattaaagacgtgtgttatttgttaatacatgacatgagtgtgtcttttttgg 40872641  T
Q  296 tggctttgtt-cattcaacaaatcaggtcagtattactattcagtgttaagtgggatgaatgggaagtcaagtgcggcgtccaagttcaatcggtccaca 394  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40872642 tggctttgtttcattcaacaaatcaggtcagtattactattcagtgttaagtgggatgaatgggaagtcaagtgcggcgtccaagttcaatgggtccaca 40872741  T
Q  395 acaaactttaacggacggcttcaactatctgtcggttttctttgtttaa 443  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40872742 acaaactataacggacggcttcaactatctgtcggttttctttgtttaa 40872790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 524 - 777
Target Start/End: Original strand, 40872875 - 40873126
Alignment:
Q  524 taacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgg 623  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||| |||||||||||| |||||||||| | |||    
T  40872875 taacccacttgggttggcatggtgatattgatttaggatcttagagtgtgctcctcttcaaggttttaggttccattctctccggtgccaatttaggtgg 40872974  T
Q  624 gctagattaacttcttnnnnnnnnnttacttttataaacaaaattatattgattttgaggaatcaaagtacaaaaagatttgattttattgaacaatttt 723  Q
    ||||| ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40872975 gctagtttaacttcttaaaaaaaa-ttacttttataaacaaaattatattgattttgaggaatcaaagtacaaaaagatttgattttattgaacaatttt 40873073  T
Q  724 caatacttttatcgaatcaaaatataaaaagatttgatttgattgaacgaacta 777  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40873074 caatac-tttatcgaatcaaaatataaaaagatttgatttgattgaacgaacta 40873126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 40875454 - 40875516
Alignment:
Q  8 gcccaaacttgacgtatgatgattggcttttccttcagctggttcattttaaattgatcttga 70  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40875454 gcccaaacttgacggatgatgattggcttttccttcagctggttcattttaaattgatcttga 40875516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 13129717 - 13129766
Alignment:
Q  574 ctcctcctcaaggttttaggatccattctctcccgtgccaatttggatgg 623  Q
    |||||||||||||||| ||| || ||||||||  ||||||||||||||||    
T  13129717 ctcctcctcaaggtttcaggttcgattctctctggtgccaatttggatgg 13129766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 627
Target Start/End: Complemental strand, 4844580 - 4844485
Alignment:
Q  532 ttgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggcta 627  Q
    |||||||||  ||||| |||||| || |||||| ||||||  ||||||||| |||| | |||||| ||||||||| |||||||||||  |||||||    
T  4844580 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggcta 4844485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 627
Target Start/End: Complemental strand, 4870276 - 4870181
Alignment:
Q  532 ttgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggcta 627  Q
    |||||||||  ||||| |||||| || |||||| ||||||  ||||||||| |||| | |||||| ||||||||| |||||||||||  |||||||    
T  4870276 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggcta 4870181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 30715791 - 30715855
Alignment:
Q  574 ctcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggctagattaacttctt 639  Q
    ||||||||||| |||| ||| || ||||||||| ||||||||||||||||||||| ||| ||||||    
T  30715791 ctcctcctcaatgtttcaggttcgattctctcc-gtgccaatttggatgggctagtttagcttctt 30715855  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 627
Target Start/End: Original strand, 30232330 - 30232432
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatggg 624  Q
    |||||| |||||||| | ||||| ||||| |||  ||||| | | ||  |||||||||| ||| | ||| |||||||||||| |||||||||||| ||||    
T  30232330 aacccacttgggttgccctggtggtattggtttgcgatctggaactgtgctcctcctcatggtctcaggttccattctctccggtgccaatttggttggg 30232429  T
Q  625 cta 627  Q
    |||    
T  30232430 cta 30232432  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 618
Target Start/End: Original strand, 46518628 - 46518721
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttg 618  Q
    |||||| |||||||||||| ||| |||||  || |||||| ||||||  |||||||||||||||| ||| |  ||||||||   ||||||||||    
T  46518628 aacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctctctgatgccaatttg 46518721  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 5273666 - 5273552
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatggg 624  Q
    |||||| |||||||||| ||||| | |||  || ||| ||| |||||  |||||||||||||| ||||| |  ||| ||||| |||||||||||| ||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggtttgattgtctccggtgccaatttgggtggg 5273567  T
Q  625 ctagattaacttctt 639  Q
    |||| ||| ||||||    
T  5273566 ctagtttagcttctt 5273552  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 637
Target Start/End: Complemental strand, 38374675 - 38374563
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatggg 624  Q
    |||||| |||||||||| ||||| | |||  || ||| ||| |||||  |||||||||||||| ||||| || |||||| || |||||||||| | ||||    
T  38374675 aacccacttgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtggg 38374576  T
Q  625 ctagattaacttc 637  Q
    |||| ||| ||||    
T  38374575 ctagtttagcttc 38374563  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 627
Target Start/End: Complemental strand, 279989 - 279928
Alignment:
Q  566 ggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggcta 627  Q
    |||||| ||||||||| ||||| | ||| || ||||||||| |||||||||||| |||||||    
T  279989 ggagtgtactcctccttaaggtctcaggttcaattctctccggtgccaatttgggtgggcta 279928  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 627
Target Start/End: Original strand, 51814494 - 51814596
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatggg 624  Q
    |||||| |||||||||| || || |||||| ||  |||||  |||||  |||||||||||||| | ||| || ||||||||| |||||||||||| ||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtggg 51814593  T
Q  625 cta 627  Q
    |||    
T  51814594 cta 51814596  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 574 - 628
Target Start/End: Original strand, 45266883 - 45266937
Alignment:
Q  574 ctcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggctag 628  Q
    |||||||||||||| | ||| || |||||| || |||||||||||||||||||||    
T  45266883 ctcctcctcaaggtctcaggttcgattctccccggtgccaatttggatgggctag 45266937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 618
Target Start/End: Complemental strand, 8177258 - 8177165
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttg 618  Q
    |||||| ||| |||||| | ||| |||||  || |||||| ||||||  |||||||||||||||| ||| || ||||||||  |||||||||||    
T  8177258 aacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctggtgccaatttg 8177165  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 623
Target Start/End: Complemental strand, 16918653 - 16918556
Alignment:
Q  526 acccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgg 623  Q
    ||||| |||||||||| | ||| ||||| ||| |||||| ||||||  |||||||||||||| ||||| |  ||||||||  |||||| |||||||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggttggattctctctggtgccactttggatgg 16918556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 23230680 - 23230567
Alignment:
Q  525 aacccaattgggttgg-catggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgg 623  Q
    |||||||||||||||| ||  ||| ||||||||| ||| || ||||||  ||||||||||| |||  ||| || ||||||||| ||| |||||||||||     
T  23230680 aacccaattgggttggtca--gtggtattgatttgggaactgggagtgtgctcctcctcaaagttccaggttcaattctctccagtgtcaatttggatga 23230583  T
Q  624 gctagattaacttctt 639  Q
    ||||  ||||||||||    
T  23230582 gctaatttaacttctt 23230567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 627
Target Start/End: Complemental strand, 42327471 - 42327369
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatggg 624  Q
    |||||| |||||||||| | ||| |||||  || ||| || ||||||  |||||||||||||| | ||| || ||||||| | |||||||||||| ||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtggg 42327372  T
Q  625 cta 627  Q
    |||    
T  42327371 cta 42327369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 627
Target Start/End: Original strand, 42602554 - 42602656
Alignment:
Q  525 aacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatggg 624  Q
    |||||| |||||||||| | ||| |||||  || ||| || ||||||  ||||| |||||||| ||||| |  ||||||||| |||||||||||| ||||    
T  42602554 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtggg 42602653  T
Q  625 cta 627  Q
    |||    
T  42602654 cta 42602656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 627
Target Start/End: Original strand, 28635695 - 28635798
Alignment:
Q  524 taacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgg 623  Q
    ||||||| |||||||| | ||||| || ||| || |||||| ||||||  ||||||||  |||| ||||| || ||||||||  |||||||||||| |||    
T  28635695 taacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatttgggtgg 28635794  T
Q  624 gcta 627  Q
    ||||    
T  28635795 gcta 28635798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 639
Target Start/End: Original strand, 46295136 - 46295211
Alignment:
Q  564 ttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggctagattaacttctt 639  Q
    ||||||||  |||||||||||||| | ||| || |||||| || |||||||||||| |||||||| ||| ||||||    
T  46295136 ttggagtgtgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 2732043 - 2732108
Alignment:
Q  574 ctcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggctagattaacttctt 639  Q
    ||||||||||| || | ||| || ||||||||| |||||||||||| |||||||| ||| ||||||    
T  2732043 ctcctcctcaaagtctcaggttcgattctctccggtgccaatttgggtgggctagtttagcttctt 2732108  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 51969066 - 51969131
Alignment:
Q  574 ctcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggctagattaacttctt 639  Q
    |||||||||||||||| ||| ||  |||||||  |||||||||||||||| |||  ||||||||||    
T  51969066 ctcctcctcaaggtttcaggttcatttctctctggtgccaatttggatggactaatttaacttctt 51969131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 618
Target Start/End: Complemental strand, 7918546 - 7918452
Alignment:
Q  524 taacccaattgggttggcatggtgatattgatttaggatcttggagtgaactcctcctcaaggttttaggatccattctctcccgtgccaatttg 618  Q
    ||||||| |||||||||| | ||| |||||  || | | || |||||| ||||||||||||||| ||||| || ||||||||  |||||||||||    
T  7918546 taacccacttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcgattctctctggtgccaatttg 7918452  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 639
Target Start/End: Complemental strand, 24334052 - 24333987
Alignment:
Q  574 ctcctcctcaaggttttaggatccattctctcccgtgccaatttggatgggctagattaacttctt 639  Q
    |||||||||||||| | ||| || |||||| || |||||||||||| |||||||| ||| ||||||    
T  24334052 ctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagtttagcttctt 24333987  T

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