View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552-Insertion-6 (Length: 701)
Name: NF5552-Insertion-6
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 20 - 701
Target Start/End: Complemental strand, 36595776 - 36595095
Alignment:
| Q |
20 |
catggcggatacgctggttaatgttaatgttctcaacaacaaacgcagcctcgaaaaccctgttgttgagggaaaagacaccaaaaaactaacaaaattc |
119 |
Q |
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| T |
36595776 |
catggcggatacgttgtttaatgttaatgttctcaacaacaaacgcagcctcgaaaatcctgttgttgaggttaaagacaccaaaaaactaacaaaattc |
36595677 |
T |
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| Q |
120 |
aatggcggagagtctgacgtagacccagaggctgcacttgccaatgcccgccatgaatttggcgaacatggcggggttaacatgtcgattgaggcctctg |
219 |
Q |
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| T |
36595676 |
aatggcggagagtctgacgtagacccagaggccgcactcgccaatgcccgccatgaatttggcgaacatggcggggttaacatgtcgattgaggcctctg |
36595577 |
T |
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| Q |
220 |
ccacgttcaccgtcatggaaccagatactctccgcaaaatatttgctggagagcttggtcatgaaggcgattactacgtctacagccgtcatttcaaccc |
319 |
Q |
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| T |
36595576 |
ccacgttcaccgtcatggaaccagatactctccgcaaaatatttgctggagagcttggtcatgaaggcgattactacgtctacagccgtcatttcaaccc |
36595477 |
T |
|
| Q |
320 |
aactgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgcctattgtacagccagtggcatgtccgccatttctgcagttttgtta |
419 |
Q |
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| T |
36595476 |
aaccgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgcctattgtacagccagtggcatgtccgccatttctgcagttttgtta |
36595377 |
T |
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| Q |
420 |
cagctctgcagccacggcggacatgttgtggcttctagtactctttatggtgggacccatgcacttttgcagcatttctttgtgaggacatgcaacataa |
519 |
Q |
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| T |
36595376 |
cagctctgcagccacggcggacatgttgtggcttctagtactctttatggtgggacccatgcacttttgcagcatttctttgtgaggacatgcaacataa |
36595277 |
T |
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| Q |
520 |
ccacaacttttgttgacatatccgatttggaagcagttgagaatgcaattgtggaagggaagaccaaagtgctgtattttgagtcaattgcaaatccaag |
619 |
Q |
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| T |
36595276 |
ccacaacttttgttgacatatccgatttggaagcagttgagaatgcaattgtggaagggaagaccaaagtgctgtattttgagtcaattgcaaatccaag |
36595177 |
T |
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| Q |
620 |
cttgaatgtggccaatactcctgagctagctaggattgcacacaaaaagggagtgactgtggtggttgataacacctttgct |
701 |
Q |
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| T |
36595176 |
cttgaatgtggccaatactcctgagcttgctaggattgcacacaaaaagggagtaactgtggtggttgataacacctttgct |
36595095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 174 - 406
Target Start/End: Original strand, 34809627 - 34809859
Alignment:
| Q |
174 |
gaatttggcgaacatggcggggttaacatgtcgattgaggcctctgccacgttcaccgtcatggaaccagatactctccgcaaaatatttgctggagagc |
273 |
Q |
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||||| |||||||| ||||| || |||||||| || || ||||| | || ||||| |||||||||||||| |||||||| || || || |||||| |
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| T |
34809627 |
gaattcggcgaacacggcggcgtaaacatgtcaatagaagcctcggtaacattcacagtcatggaaccagaaactctccgacgcatgttcgccggagagt |
34809726 |
T |
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| Q |
274 |
ttggtcatgaaggcgattactacgtctacagccgtcatttcaacccaactgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgc |
373 |
Q |
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| T |
34809727 |
taggtccagaccgcgacttcttcgtctacagccgtcacttcaaccctaccgtccttaacctctcccgtctaatggccgctctcgaaggtacagaagccgc |
34809826 |
T |
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| Q |
374 |
ctattgtacagccagtggcatgtccgccatttc |
406 |
Q |
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|| |||||| |||| ||||||||||||||||| |
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| T |
34809827 |
ttactgtacatccagcggcatgtccgccatttc |
34809859 |
T |
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