View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5552-Insertion-8 (Length: 495)
Name: NF5552-Insertion-8
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552-Insertion-8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 32691244 - 32691690
Alignment:
| Q |
8 |
tgattccaccaacctggccaatttatgccgtttaattacatttaattaccagacattgtttaattttgattatgtgcttgtagggacaaataggtctcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32691244 |
tgattccaccaacctggccaatttatgccgtttaattacatttaattaccagacattgtttaattttgattatgtgcttgtagggacaaataggtctcaa |
32691343 |
T |
|
| Q |
108 |
accacatgggaacagtttctttaattactacctattttagtgtaagattaattgaaattgaaattgaaatccaaagatattctaattaagtggtgctaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32691344 |
accacatgggaacagtttctttaattactacctattttagtgtaagattaattgaaattgaaattgaaattgaaagatattctaattaagtggtgctaaa |
32691443 |
T |
|
| Q |
208 |
atattctgatgctttctagtacagcgcctctatggcacaagaaaacgaccttgctgtgtgacaggtgtagcgaatgaataactaatttgatatatagttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32691444 |
atattctgatgctttctagtacagcgcctctatggcacaagaaaacgaccttgctgtgtgacaggtgtagcgaatgaataactaatttgatatatagttt |
32691543 |
T |
|
| Q |
308 |
tcatttttgcttcnnnnnnnnnnnnaataaatatataaatgttcatgaatatttagggtaaatataatttggtttcgaaatgacatcattttgtgataag |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
32691544 |
tcatttttgctt------tttttttaataaatatataaatgttcatgaatatttagggtaaatataatttggtttcgaaacgacatcattttgtaacaag |
32691637 |
T |
|
| Q |
408 |
agtatatcattttttcgataaacaaagattattgatagtaatccaatccagca |
460 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
32691638 |
agtatatcattttttcgataaacaaaaattattgatagtagtccaatccagca |
32691690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 460
Target Start/End: Original strand, 32691761 - 32691844
Alignment:
| Q |
376 |
ttggtttcgaaatgacatcattttgtgataagagtatatcattttttcgataaacaaagattattgatagtaatccaatccagca |
460 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| || ||||||||||||||||||| || ||||||||||||| ||||||| |||| |
|
|
| T |
32691761 |
ttggtttcgaaatgacatcatttcatgacaagggtgtatcattttttcgataaacgaa-attattgatagtagtccaatcgagca |
32691844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University