View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552-Insertion-9 (Length: 414)
Name: NF5552-Insertion-9
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552-Insertion-9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 414
Target Start/End: Original strand, 12009055 - 12009482
Alignment:
| Q |
7 |
agtaagatcaccaaaattgaattgaatacctgagattataataattttagaagtttgggtttagagagattcaattgttggatttcccctaaatcccaag |
106 |
Q |
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| T |
12009055 |
agtaagaccaccaaaattgaattgaatacctgagattgtaataattttagaagtttgggtttagagagattcaattgctggatttcccctaaatcccaag |
12009154 |
T |
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| Q |
107 |
atcactaagctctattcactcatggccatagaaaacatgaatatgtaataatctagtaaacaagaaaaatggaaaaacctggattgaatttgaagttccc |
206 |
Q |
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| T |
12009155 |
atcactaagctctattcactcatggccatagaaaacatgaatatgtaataatctagtaaagaagaaaaatggaaaaacctggattgaatttgaagttccc |
12009254 |
T |
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| Q |
207 |
gaattgcaatcaaaagaaaatcatgaaatttaggaattctaagaagttttacgagtgaaatatgatgcaaaaacaaagtatatgccccgtgctcttacaa |
306 |
Q |
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| T |
12009255 |
gaattgcaatcaaaagaaaatcatgaaatttaggaattctaagaagttttacgagtgaaatatgatgcaaaaac-aagtatatgctccgtggtcttacaa |
12009353 |
T |
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| Q |
307 |
catatggccatccaaattacaaaatgaaggga---------------------ttacgtgcaaccttgatccttgctgtgaaatgtactggtttttatcc |
385 |
Q |
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| T |
12009354 |
catatggccatccaaattacaaaatgaagggattacggctatataacgtggcgttacgtgcaaccttgatccctgctgtgaaatgtactggtttttatcc |
12009453 |
T |
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| Q |
386 |
ttttattcattctcacacttttgcaccat |
414 |
Q |
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| T |
12009454 |
ttttattcattctcacacttttgcaccat |
12009482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 227 - 414
Target Start/End: Original strand, 12002794 - 12003000
Alignment:
| Q |
227 |
tcatgaaatttaggaattctaagaagttttacgagtgaaatatgatgcaaaaacaaagtatatgccccgtgctcttacaacatatggccatccaaattac |
326 |
Q |
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| T |
12002794 |
tcattaaatttaggaattctta--agttttacgagtgaaatatgatgcaaaaacaaagtatatgccccgtggtcttacaacatatggccatccaaattac |
12002891 |
T |
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| Q |
327 |
aaaatgaaggga---------------------ttacgtgcaaccttgatccttgctgtgaaatgtactggtttttatccttttattcattctcacactt |
405 |
Q |
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| T |
12002892 |
aaaatgaagggattacggctatataacgtggcgttacgtgcaaccttgatccctgctgtgaaatgtactggtttttatccttttattcattctcacactt |
12002991 |
T |
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| Q |
406 |
ttgcaccat |
414 |
Q |
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| T |
12002992 |
ttgcaccat |
12003000 |
T |
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