View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5552_high_1 (Length: 708)

Name: NF5552_high_1
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5552_high_1
NF5552_high_1
[»] chr4 (19 HSPs)
chr4 (243-675)||(12285623-12286055)
chr4 (256-495)||(23692807-23693046)
chr4 (282-540)||(16403997-16404256)
chr4 (268-540)||(20748477-20748749)
chr4 (418-539)||(24715645-24715766)
chr4 (19-404)||(17743556-17743945)
chr4 (268-531)||(35150106-35150371)
chr4 (257-492)||(17650914-17651149)
chr4 (376-500)||(9883033-9883157)
chr4 (19-223)||(20748237-20748441)
chr4 (77-127)||(11419768-11419818)
chr4 (271-332)||(24715762-24715823)
chr4 (77-120)||(14116800-14116843)
chr4 (37-144)||(35150485-35150592)
chr4 (464-522)||(9736469-9736527)
chr4 (489-539)||(16300679-16300729)
chr4 (36-126)||(16404377-16404467)
chr4 (86-115)||(11011155-11011184)
chr4 (468-540)||(9597328-9597400)
[»] chr8 (17 HSPs)
chr8 (187-540)||(20706894-20707254)
chr8 (37-540)||(12843102-12843613)
chr8 (444-539)||(19342153-19342248)
chr8 (444-539)||(19371651-19371746)
chr8 (291-539)||(15752962-15753209)
chr8 (422-539)||(22881701-22881818)
chr8 (354-540)||(25809474-25809661)
chr8 (474-540)||(10516409-10516475)
chr8 (322-540)||(18530288-18530506)
chr8 (385-537)||(15610176-15610328)
chr8 (456-539)||(15748416-15748499)
chr8 (260-359)||(31288020-31288119)
chr8 (406-500)||(15177341-15177435)
chr8 (247-393)||(35103823-35103968)
chr8 (482-542)||(10252874-10252934)
chr8 (336-404)||(33928491-33928559)
chr8 (60-125)||(10516815-10516880)
[»] chr7 (21 HSPs)
chr7 (271-539)||(6414735-6415004)
chr7 (60-540)||(5459036-5459521)
chr7 (343-499)||(19650624-19650781)
chr7 (19-138)||(19648170-19648287)
chr7 (343-500)||(10677604-10677762)
chr7 (451-539)||(23134902-23134990)
chr7 (381-541)||(23183409-23183569)
chr7 (458-540)||(11739520-11739602)
chr7 (256-437)||(32562340-32562522)
chr7 (247-541)||(39199746-39200041)
chr7 (384-541)||(39227379-39227534)
chr7 (461-540)||(7681499-7681578)
chr7 (256-438)||(32561966-32562149)
chr7 (137-211)||(6414626-6414700)
chr7 (459-540)||(3316119-3316200)
chr7 (87-172)||(10677351-10677435)
chr7 (461-540)||(7666240-7666319)
chr7 (77-114)||(27707331-27707368)
chr7 (444-539)||(1675003-1675098)
chr7 (463-539)||(4122570-4122646)
chr7 (458-542)||(23662310-23662394)
[»] chr6 (4 HSPs)
chr6 (233-538)||(14761078-14761382)
chr6 (284-522)||(9188061-9188299)
chr6 (69-122)||(4312426-4312479)
chr6 (268-316)||(12869976-12870024)
[»] chr1 (14 HSPs)
chr1 (271-540)||(20816885-20817150)
chr1 (279-541)||(22669013-22669276)
chr1 (19-531)||(34488162-34488672)
chr1 (256-539)||(11833486-11833770)
chr1 (19-464)||(12900261-12900713)
chr1 (444-534)||(36754874-36754964)
chr1 (344-438)||(12892968-12893062)
chr1 (427-539)||(12889220-12889330)
chr1 (444-540)||(17048052-17048148)
chr1 (19-123)||(17048220-17048324)
chr1 (159-239)||(22669291-22669371)
chr1 (36-172)||(11833311-11833446)
chr1 (467-515)||(10751559-10751607)
chr1 (216-300)||(40817192-40817276)
[»] chr5 (7 HSPs)
chr5 (150-359)||(16687236-16687444)
chr5 (412-537)||(11848260-11848385)
chr5 (385-485)||(16687129-16687229)
chr5 (466-540)||(24558950-24559024)
chr5 (466-540)||(24599982-24600056)
chr5 (87-172)||(19990516-19990600)
chr5 (77-117)||(37390308-37390348)
[»] chr3 (9 HSPs)
chr3 (457-540)||(23528340-23528423)
chr3 (291-538)||(4596832-4597079)
chr3 (344-526)||(2120113-2120296)
chr3 (312-538)||(4698579-4698803)
chr3 (471-537)||(27175613-27175679)
chr3 (77-117)||(17637502-17637542)
chr3 (469-537)||(27686187-27686254)
chr3 (458-526)||(2906526-2906594)
chr3 (452-516)||(9828954-9829018)
[»] chr2 (13 HSPs)
chr2 (344-539)||(18114987-18115181)
chr2 (345-540)||(35511819-35512015)
chr2 (415-500)||(21538466-21538551)
chr2 (103-265)||(18114776-18114937)
chr2 (447-536)||(16748054-16748142)
chr2 (422-539)||(24386339-24386456)
chr2 (91-226)||(35512088-35512222)
chr2 (70-172)||(30462725-30462826)
chr2 (467-539)||(13896940-13897011)
chr2 (467-539)||(14037557-14037628)
chr2 (444-503)||(28232129-28232188)
chr2 (77-122)||(16587097-16587142)
chr2 (77-117)||(27765611-27765651)
[»] scaffold0466 (1 HSPs)
scaffold0466 (343-540)||(4311-4510)


Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 243 - 675
Target Start/End: Complemental strand, 12286055 - 12285623
Alignment:
Q  243 cttattctcatcggagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12286055 cttattctcatcggagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatcttctaagtcttcaaaggtttccagt 12285956  T
Q  343 gcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgt 442  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12285955 gcttctcttgagtaccataatgctttcctttatgctcggagcttgatgtatcaaaaccaaaatttaaatttgaagtcaaaattcaattatatggtcttgt 12285856  T
Q  443 gcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaagg 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12285855 gcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaatccactttggttcaacaagg 12285756  T
Q  543 tgcttagattctcattccgctccacatccaactttgagtactttatcacttttattcaattggacagacttagagaatataactgatgctttcaaccaca 642  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12285755 tgcttagattctcattctgctccacatccaactttgagtactttaccacttttattcaattggacagacttagagaatataactgatgatttcaaccaca 12285656  T
Q  643 cgtgattgcctattctcttcatcattaaaatct 675  Q
    |||||||||||||||||||||||||||||||||    
T  12285655 cgtgattgcctattctcttcatcattaaaatct 12285623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 256 - 495
Target Start/End: Original strand, 23692807 - 23693046
Alignment:
Q  256 gagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagt 355  Q
    |||| ||||||||||||| | || | | |||||||||| |  ||||||||||||||||| | ||||||||| | | | ||||||| ||||||||||||||    
T  23692807 gagttttcaaaacatcttatgatcaaagctttgactttctgctgacctttcttcatatcgtcttctaagtcattagaagtttccaatgcttctcttgagt 23692906  T
Q  356 accataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaaca 455  Q
    |||||| | ||||||||| || || ||||||||||||||| ||||||||||| | |||||||||| |||| |||||||||||||||  | |||||| |||    
T  23692907 accatactactttcctttgtgctcagagcttgatgtatcagaaccaaaatttaattttgaagtcagaatttaattatatggtcttgctcgcttgaacaca 23693006  T
Q  456 cattagagtacccaattgttctttcttacattgttatcat 495  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  23693007 cattagagtacccaattgttatttcatacattgttatcat 23693046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 282 - 540
Target Start/End: Complemental strand, 16404256 - 16403997
Alignment:
Q  282 aactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcgg 381  Q
    |||||| ||||||| |||||||||||||| ||||| |||||||| || | | ||||||| || ||||||||||||||| ||| ||||||||||||||| |    
T  16404256 aactttaactttttgttgacctttcttcagatcatcttctaagtttttagaagtttccaatgtttctcttgagtaccaaaatactttcctttatgttcag 16404157  T
Q  382 agcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttct 481  Q
    |||||   |||||| ||||||||||||| |||||| |||||||| || | |||| ||| |  || ||||| |||||||||||||   |||| || ||||     
T  16404156 agcttagagtatcagaaccaaaatttgattttgaattcaaaatttaaatttatgatctcgaacatttgaagacacattagagtattaaattattatttca 16404057  T
Q  482 tacattgttatcatcaaaattttatagacattgttttaaaa-cccactttggttcaacaa 540  Q
    ||||||||||||| |||||| ||| ||| |||| | ||||| ||||||||||||||||||    
T  16404056 tacattgttatcaccaaaatattaaagaaattggtctaaaatcccactttggttcaacaa 16403997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 268 - 540
Target Start/End: Original strand, 20748477 - 20748749
Alignment:
Q  268 catcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctt 367  Q
    ||||||||||| | | |||| |||||||||| |||||| |||| ||||| || |||||||||| | ||||||| |||||||||||||||||| |||||||    
T  20748477 catcttctaatcaaagctttaactttttattaaccttttttcagatcatcttttaagtcttcagaagtttccaatgcttctcttgagtaccaaaatgctt 20748576  T
Q  368 tcctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacc 467  Q
    |||||| || ||  |||||   |||||| | |||||| || | ||| |||| | |||  | ||| ||||||||| ||||||||| ||| ||||  ||| |    
T  20748577 tcctttgtgctcaaagcttagagtatcatagccaaaacttaattttcaagttagaatatagttacatggtcttgcgcacttgaatacaaattaatgtatc 20748676  T
Q  468 caattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||||||||| |||||||||||||||  |   |||||||||||||| ||| ||||||||||||| |||||    
T  20748677 caattgttctttcatacattgttatcatcgtatccttatagacattgttctaatacccactttggtttaacaa 20748749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 418 - 539
Target Start/End: Complemental strand, 24715766 - 24715645
Alignment:
Q  418 tcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttt 517  Q
    |||||||| |||| ||||||||||  || ||||| |||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |     
T  24715766 tcaaaatttaattgtatggtcttgcacaattgaacacacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatg 24715667  T
Q  518 taaaacccactttggttcaaca 539  Q
    ||||||||||||||||||||||    
T  24715666 taaaacccactttggttcaaca 24715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 17743556 - 17743945
Alignment:
Q  19 atagtactagaagattcctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaa 118  Q
    |||||||||||| | | ||||| | |||  |||||  ||| ||||||||  |||| ||||||| ||  |||||||||||| || ||||||| |||||||     
T  17743556 atagtactagaaaaattctttgttacttgtggaatgatctgttacattctctttgtcattgaacttctttgtttgtttctgcacgtggtcataagaagac 17743655  T
Q  119 aaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacatacttc 218  Q
    ||| ||||  |||  | ||||||||| |   |||| | ||||||| |||||| | |||| ||||||| | | |||||| |||||||||| ||| | ||||    
T  17743656 aaatagtactatcaaagctttgaaagag---ttccataaaaagaagacaaaattggtcagagtcacccaaattgctgatgtgtccttcaaaacttgcttc 17743752  T
Q  219 cttcagagtctaactccatcaaaacttattctcatcggagtcttcaaa-------acatcttctaataataactttgactttttattgacctttcttcat 311  Q
    ||||||||||| | ||||| | | ||| || ||||  ||||||||||        |||| |||| || | | |||||||||||| ||||||||||||||     
T  17743753 cttcagagtctgaatccataagagcttgttatcattagagtcttcaaggattgatacattttctgatcagagctttgactttttgttgacctttcttcag 17743852  T
Q  312 atcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaa 404  Q
    ||||| | ||||||||||| | ||||||| | |||||||||| ||||| |||| |||||||||| ||  |||| |||||||||||||||||||    
T  17743853 atcatctgctaagtcttcagaagtttccaatacttctcttgaataccaaaatgatttcctttatatttagagcatgatgtatcaaaaccaaaa 17743945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 268 - 531
Target Start/End: Complemental strand, 35150371 - 35150106
Alignment:
Q  268 catcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctt 367  Q
    ||||||||||| | |||||| | ||||| |||||||||||||||||||| ||||||||||||| |  | | |   || |||||||||||||| | || ||    
T  35150371 catcttctaatcagaactttaattttttgttgacctttcttcatatcatcttctaagtcttcagaaatcttcttagcatctcttgagtaccaaagtgttt 35150272  T
Q  368 tcct-ttatgttcggagcttgatgtatcaaaaccaa-aatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagta 465  Q
    |  | ||  |||| ||||||||||| ||| |||||| || |||| |||||||||| |||| | || |||||| |||  | |||||| ||||| || ||||    
T  35150271 ttttcttgcgttcagagcttgatgtttcagaaccaacaacttgactttgaagtcagaatttagttttatggtattgcacccttgaacacacactaaagta 35150172  T
Q  466 cccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttg 531  Q
    | |||||||| |||| ||||||||||||||||||| |||| |||||||||| |||||| |||||||    
T  35150171 ctcaattgttatttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttg 35150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 257 - 492
Target Start/End: Complemental strand, 17651149 - 17650914
Alignment:
Q  257 agtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagta 356  Q
    |||||||| |||||||| | |||| | |||||||||| | || ||||||||| | ||| | ||  || || ||| | ||||||| |||||||||||||||    
T  17651149 agtcttcacaacatcttttgataagagctttgactttatctttacctttctttagatcttctttcaaatcatcatatgtttccaatgcttctcttgagta 17651050  T
Q  357 ccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatt-tgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaaca 455  Q
    |||||||||||||||| | | ||||| |||| |||||   ||||||||   ||| |||||||||| || | |||||||||||||||  |||||||| |||    
T  17651049 ccataatgctttccttaa-gctcggatcttgttgtattcgaaccaaaaacatgattttgaagtcagaaatgaattatatggtcttgcacacttgaacaca 17650951  T
Q  456 cattagagtacccaattgttctttcttacattgttat 492  Q
    ||||||||||| || ||  |||||| |||||||||||    
T  17650950 cattagagtacacactttctctttcatacattgttat 17650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 9883157 - 9883033
Alignment:
Q  376 gttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgtt 475  Q
    ||||| ||| |||||||||| ||||||||  ||| |||||||||  |||| |||| ||||||  ||  ||||| || ||| |||||||||  ||||||||    
T  9883157 gttcgaagcatgatgtatcagaaccaaaaactgactttgaagtcttaatttaattttatggtagtgcacacttaaacacaaattagagtattcaattgtt 9883058  T
Q  476 ctttcttacattgttatcatcaaaa 500  Q
    ||||| |||||| ||| ||||||||    
T  9883057 ctttcatacatttttaccatcaaaa 9883033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 20748237 - 20748441
Alignment:
Q  19 atagtactagaagattcctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaa 118  Q
    |||||||||||  | ||||||||||||||  ||||  | | ||||||||  |||||| ||||| ||  |||||||||| | || ||||| |||| ||||     
T  20748237 atagtactagagaaatcctttgcttcttatcgaatgatgtgttacattctctttgccgttgaatttttttgtttgtttttgcacgtggttagaaaaagac 20748336  T
Q  119 aaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacatacttc 218  Q
    ||||||||  | | |||||||||||   | ||||| ||| ||||| |||||||||||||  |||| | || ||  ||| |||||||| ||||||| ||||    
T  20748337 aaacagtactaccagaactttgaaaacaacgttccatcataagaagacaaaactagtcatggtcatctaggctattgatgtgtcctttagaacatgcttc 20748436  T
Q  219 cttca 223  Q
    |||||    
T  20748437 cttca 20748441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 11419768 - 11419818
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagtat 127  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||| ||||    
T  11419768 ttgaagttctttgtttgtttctacacgtggtcagaagaagaaaaactgtat 11419818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 24715823 - 24715762
Alignment:
Q  271 cttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaa 332  Q
    |||||||| | | |||| |||||||||||||||||||||| | ||| |||||||||||||||    
T  24715823 cttctaatcaaagcttttactttttattgacctttcttcagaccatcttctaagtcttcaaa 24715762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 14116800 - 14116843
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaagaagaaaa 120  Q
    ||||| || ||||||||||||| |||||||||||||||||||||    
T  14116800 ttgaattttcttgtttgtttcttcatgtggtcagaagaagaaaa 14116843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 35150592 - 35150485
Alignment:
Q  37 tttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaac 136  Q
    |||||||||| ||||||  | | ||||||||  |||||| ||||||||  || |||||||||||| |||||||| | |||| ||| ||||| ||  ||||    
T  35150592 tttgcttctttgggaatcatttgttacattctctttgcctttgaagttctttatttgtttctacaggtggtcaggacaagacaaatagtatgattagaac 35150493  T
Q  137 tttgaaag 144  Q
    ||||||||    
T  35150492 tttgaaag 35150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 522
Target Start/End: Original strand, 9736469 - 9736527
Alignment:
Q  464 tacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaa 522  Q
    |||| |||||||||||| |||||| |||||||||||| | || |||||||||| |||||    
T  9736469 tacctaattgttctttcatacatttttatcatcaaaactgtagagacattgttctaaaa 9736527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 539
Target Start/End: Complemental strand, 16300729 - 16300679
Alignment:
Q  489 ttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||||||||| |||| |||||||||| ||||||||| ||| ||||||||    
T  16300729 ttatcatcaaaactttaaagacattgttctaaaacccattttagttcaaca 16300679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 16404467 - 16404377
Alignment:
Q  36 ctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagta 126  Q
    |||||||||||| |||||  | | ||||| ||  |||| ||||||||||  |||||||||||  || ||||||||||||||| ||||||||    
T  16404467 ctttgcttcttatggaatgatttgttacaatctctttgtcattgaagttatttgtttgtttcagcacgtggtcagaagaagacaaacagta 16404377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 11011184 - 11011155
Alignment:
Q  86 cttgtttgtttctacatgtggtcagaagaa 115  Q
    ||||||||||||||||||||||||||||||    
T  11011184 cttgtttgtttctacatgtggtcagaagaa 11011155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 540
Target Start/End: Original strand, 9597328 - 9597400
Alignment:
Q  468 caattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |||||||||||   |||||||||||||||||||| ||| |||  ||||| |||||| ||  ||||||||||||    
T  9597328 caattgttcttctatacattgttatcatcaaaatcttagagatgttgttctaaaactcatcttggttcaacaa 9597400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 187 - 540
Target Start/End: Original strand, 20706894 - 20707254
Alignment:
Q  187 agactgctgacgtgtccttcagaacatacttccttcagagtctaactccatcaaaacttattctcatcggagtcttcaaaac-------atcttctaata 279  Q
    |||||| ||||||||| || ||||| | ||| ||||| ||| ||| ||||||||||||| || |||||  |||||| ||| |       ||||||| |||    
T  20706894 agactgttgacgtgtcatttagaacttgctttcttcaaagtataattccatcaaaacttgttatcatcaaagtctttaaaccttgatgcatcttctgata 20706993  T
Q  280 ataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttc 379  Q
    | || ||| ||||||||||||||| ||||||||||||  |||||||||||| | || | ||  ||||||| ||||||||| ||||||||| ||||  |||    
T  20706994 aaaaatttaactttttattgacctatcttcatatcatcctctaagtcttcagaagtcttcatagcttctcatgagtaccaaaatgctttcatttacattc 20707093  T
Q  380 ggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttcttt 479  Q
     ||| ||||||||| | |||||||| |||| ||||||||||  |||  ||||||||||| |   |||||||| ||||||||||||| | |||||||||||    
T  20707094 agagtttgatgtattagaaccaaaacttgactttgaagtcatgatttgattatatggtcctacacacttgaacacacattagagtatctaattgttcttt 20707193  T
Q  480 cttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |  |||||||||||||  |||  ||||||||||||||||||||| ||||||||||||||||    
T  20707194 caaacattgttatcatttaaaccttatagacattgttttaaaactcactttggttcaacaa 20707254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 37 - 540
Target Start/End: Original strand, 12843102 - 12843613
Alignment:
Q  37 tttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaac 136  Q
    ||||||||||  |||||| || ||||||||| |||||||||| |||||  |||||||||| | ||| |||||||||||||| || || ||  ||| ||||    
T  12843102 tttgcttctttaggaataatccattacattctatttgccattaaagttctttgtttgtttttgcatatggtcagaagaagacaagcaatactatcagaac 12843201  T
Q  137 tttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacatacttccttcagagtctaactcca 236  Q
    |||||||| |||||| ||||| ||||| |||||||| |||||||||||| | | || ||| ||||| ||||| || |  || |||||| ||| || || |    
T  12843202 tttgaaagcgatgttgcttcagaagaagacaaaactggtcaaagtcacccaaattgttgatgtgtctttcagtacttgatttcttcagtgtcgaaatcaa 12843301  T
Q  237 tcaaaacttattctcatcggagtcttcaaaac-------atcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttc 329  Q
    | | | ||| |||||||| ||||||||||  |       ||||| | ||   | ||||| |||||| |||| ||||| ||||||||| ||  ||||||||    
T  12843302 ttagagcttgttctcatcagagtcttcaaggcttgatgcatcttatgatcggagctttgcctttttgttgatctttcctcatatcatctttcaagtcttc 12843401  T
Q  330 aaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatt-tgaatttgaagtcaaaattcaa 428  Q
    | | ||| | | |||||||| ||||||||| |||| ||| ||||  |||| |||  |||||||||| ||||||||   ||| |||||||||| |||| ||    
T  12843402 agaagttccta-tgcttctcctgagtaccaaaatgtttttctttgagttcagagtatgatgtatcataaccaaaagcatgactttgaagtcagaatttaa 12843500  T
Q  429 ttatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgtt-ttaaaacccac 527  Q
    |||||||||| ||  |||||||| ||||||||| ||| |||||| ||||||| |||||| |||||||||||| | || ||||| |||| | |||| |||     
T  12843501 ttatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaactctagagacactgttctaaaaatccat 12843600  T
Q  528 tttggttcaacaa 540  Q
    |||||||||||||    
T  12843601 tttggttcaacaa 12843613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 19342248 - 19342153
Alignment:
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||||| ||||||| | ||| |||||||||||||| ||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||    
T  19342248 cacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttcaaca 19342153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 19371746 - 19371651
Alignment:
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||||| ||||||| | ||| |||||||||||||| ||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||    
T  19371746 cacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttcaaca 19371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 291 - 539
Target Start/End: Original strand, 15752962 - 15753209
Alignment:
Q  291 tttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatg 390  Q
    ||||| |||||||||||||| ||||| || |||||| | | | || | ||  |||| ||||||||||||   |||||||||||  |||| |||||||||     
T  15752962 tttttgttgacctttcttcagatcatcttataagtcattataagtcttcatagcttttcttgagtaccaacgtgctttcctttgggttcagagcttgata 15753061  T
Q  391 tatcaaaaccaa-aatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgt 489  Q
    ||||| |||||| ||  ||| ||||||||||||||| |||||||||||| |    | | ||   | ||||| ||||||||||||||||| | ||||||||    
T  15753062 tatcataaccaataacatgactttgaagtcaaaatttaattatatggtcatccatattcgag--ctcattaaagtacccaattgttcttacatacattgt 15753159  T
Q  490 tatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||| ||||| ||| |||| ||||| ||||| ||| ||||||||||||    
T  15753160 tatcataaaaatcttagagactttgttctaaaatccaatttggttcaaca 15753209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 422 - 539
Target Start/End: Original strand, 22881701 - 22881818
Alignment:
Q  422 aattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaa 521  Q
    |||| |||||||||||| |   |||| ||| ||||||||||||| |||||||||||||| || ||| ||||||||||||  ||| |||||||||| ||||    
T  22881701 aatttaattatatggtcatacacactagaacacacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttctaaa 22881800  T
Q  522 acccactttggttcaaca 539  Q
    || |||||||||||||||    
T  22881801 actcactttggttcaaca 22881818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 354 - 540
Target Start/End: Original strand, 25809474 - 25809661
Alignment:
Q  354 gtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaa-aatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaa 452  Q
    |||||| ||||||||| ||| | ||  ||||||||||| |||||| ||| || |||| | |||||||   ||| |||||||| |||  |  |||| |||     
T  25809474 gtaccaaaatgctttcatttgtctttagagcttgatgtttcaaaagcaataacttgactatgaagtcgggatttaattatatagtccggcacactcgaac 25809573  T
Q  453 acacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||||||||| |||||| ||||||  ||| |||||| ||||||||   ||||||||||||| ||||||||||||||| |||||||    
T  25809574 acacattagagtatccaattattcttttatactttgttaacatcaaaaccatatagacattgttctaaaacccactttggatcaacaa 25809661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 540
Target Start/End: Complemental strand, 10516475 - 10516409
Alignment:
Q  474 ttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||    
T  10516475 ttctttcatacattgttatcatcaaaatcttataaacattgttctaaaacccactttagttcaacaa 10516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 322 - 540
Target Start/End: Original strand, 18530288 - 18530506
Alignment:
Q  322 aagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaa 421  Q
    ||||||||| | ||| ||| ||||| ||||| |||| | |||| |||||||| || |  ||||||||||||||| ||  |||| | ||  || |||| |     
T  18530288 aagtcttcagaagttaccaatgcttttcttgtgtacaaaaatgttttcctttgtgcttagagcttgatgtatcagaattaaaactcgacctttaagttag 18530387  T
Q  422 aattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaa 521  Q
    |||| |||||||||||||||   ||||||  ||||||||||||||| |||| || |||  ||||||||||||||||||| || | |||||| ||  ||||    
T  18530388 aatttaattatatggtcttgcatacttgatcacacattagagtaccaaattattttttaatacattgttatcatcaaaacttaagagacatcgtcctaaa 18530487  T
Q  522 acccactttggttcaacaa 540  Q
    || || |||| ||||||||    
T  18530488 actcattttgattcaacaa 18530506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 15610176 - 15610328
Alignment:
Q  385 ttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttac 484  Q
    |||||||||||  || |||| ||||  ||||||||| |||| ||||| |||||| |   || ||||| ||| ||||||||| | | |||||||| |  ||    
T  15610176 ttgatgtatcagtacgaaaacttgaccttgaagtcagaatttaattaaatggtcctaaacatttgaatacatattagagtaacaagttgttcttacacac 15610275  T
Q  485 attgttatcatcaaaattttatagacattgttttaaaacccactttggttcaa 537  Q
    ||| |||| |||||||  |||||||||||||| |||||||||||||| |||||    
T  15610276 atttttattatcaaaaccttatagacattgttctaaaacccactttgattcaa 15610328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 539
Target Start/End: Original strand, 15748416 - 15748499
Alignment:
Q  456 cattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    ||||||||||  ||||||||||||| |||||||||||||| ||||| ||| |||| ||||| |||||  || ||||||||||||    
T  15748416 cattagagtaggcaattgttctttcatacattgttatcataaaaatcttagagactttgttctaaaattcaatttggttcaaca 15748499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 31288020 - 31288119
Alignment:
Q  260 cttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtacca 359  Q
    |||||| ||||||||| || | | |||||||||| | || ||||||||| ||||||| ||||||||||||| | ||||||  ||||| ||||||||||||    
T  31288020 cttcaagacatcttcttatcagagctttgactttatgttcacctttctttatatcatcttctaagtcttcagaagtttcccatgcttttcttgagtacca 31288119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 500
Target Start/End: Complemental strand, 15177435 - 15177341
Alignment:
Q  406 ttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaa 500  Q
    |||| |||||||| |||||| ||||   ||||||||| |||||||| | ||||| ||| || ||||||||||||| ||| |||||||||| ||||    
T  15177435 ttgactttgaagttaaaatttaattccttggtcttgtacacttgaacatacatttgagcacacaattgttctttcatactttgttatcataaaaa 15177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 393
Target Start/End: Complemental strand, 35103968 - 35103823
Alignment:
Q  247 ttctcatcggagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgctt 346  Q
    ||||||||  ||| |||| ||||| ||||||  | | |||||| ||||| ||||| ||| |||||||||| |||||| |||||| |   ||||| | |||    
T  35103968 ttctcatcaaagtgttcagaacattttctaaccagagctttgattttttcttgacattttttcatatcatcttctaattcttcataaaattccaatactt 35103869  T
Q  347 ctcttgagtaccataatgctttcctttatgttcggagcttgatgtat 393  Q
     | ||||||||||||||||||||| ||||| |||||  |||||||||    
T  35103868 ttattgagtaccataatgctttcc-ttatgctcggaatttgatgtat 35103823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 542
Target Start/End: Original strand, 10252874 - 10252934
Alignment:
Q  482 tacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaagg 542  Q
    ||||||||||| |||||||  ||| |||||||||| ||||| | |||||||||||||||||    
T  10252874 tacattgttataatcaaaaccttaaagacattgttctaaaatctactttggttcaacaagg 10252934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 33928559 - 33928491
Alignment:
Q  336 ttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaa 404  Q
    |||||||| |||||||||||| || ||||||||||||| || ||  |||||||||||||| ||| ||||    
T  33928559 ttccagtgtttctcttgagtatcaaaatgctttcctttgtgctcaaagcttgatgtatcagaactaaaa 33928491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 10516880 - 10516815
Alignment:
Q  60 ttacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagt 125  Q
    ||||||||  |||||||||||||||   |||||| |||| || ||||||||||||||| |||||||    
T  10516880 ttacattctctttgccattgaagttctatgtttgcttctgcacgtggtcagaagaagacaaacagt 10516815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 271 - 539
Target Start/End: Original strand, 6414735 - 6415004
Alignment:
Q  271 cttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcc 370  Q
    ||||| || ||| |||||| ||||| |||||||| |||||||| || || |||||||||||| |||| |   |||| |||||||||||| |||| ||| |    
T  6414735 cttctgatcatagctttgattttttgttgaccttacttcatataatcttgtaagtcttcaaaagttttcttagcttttcttgagtaccaaaatgtttttc 6414834  T
Q  371 tttatgttcggagcttgatgtatcaaaaccaa-aatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtaccca 469  Q
    |||  |||||||||||||||| |||||||||| || || | |||||||||| |||| |||||||| ||| ||  ||||||||  || |||||||||||||    
T  6414835 tttgcgttcggagcttgatgtttcaaaaccaataacttaactttgaagtcataatttaattatatcgtcctgcacacttgaatgcatattagagtaccca 6414934  T
Q  470 attgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    ||| ||||||| |||||||||||||| |||| |||| |||||||||| || ||||||||||| |||||||    
T  6414935 attattctttcatacattgttatcataaaaaatttaaagacattgttctataacccactttgattcaaca 6415004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 60 - 540
Target Start/End: Complemental strand, 5459521 - 5459036
Alignment:
Q  60 ttacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaactttgaaagtgatgttccttcaaa 159  Q
    ||||||||  ||||||| |||| ||  |||||||||| | || |||||||||| |||| ||||| ||  ||| ||| |||||||| || ||| || ||||    
T  5459521 ttacattctctttgccactgaatttctttgtttgtttttgcacgtggtcagaaaaagataaacaatactatcagaattttgaaagcgacgtttctccaaa 5459422  T
Q  160 agaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacatacttccttcagagtctaactccatcaaaacttattctcatcggagt 259  Q
    |||| |||||| | || | |||||||   |||||| || ||||||||  ||| | |||||||| |||| | | ||||||| | ||| |||| ||| ||||    
T  5459421 agaagacaaaattggtgagagtcacctgaactgcttacatgtccttcttaacttgcttccttctgagtttgaatccatcatagcttgttcttatcagagt 5459322  T
Q  260 ct-----tcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgag 354  Q
     |     |  |  |||||||| || | | ||||||||| || |||||||||||| |||| || |||||| |  | |||  |||||| |||||||||||||    
T  5459321 ataaggcttgatgcatcttctgatcaaatctttgacttcttcttgacctttctttatattatcttctaaattcttaaat-tttccaatgcttctcttgag 5459223  T
Q  355 taccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaa-tttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaa 453  Q
    | | | |||| ||||| || |||||| |||||||| ||||||||| |||| ||||| |||||||| | |||| ||||||| ||   ||   ||| ||| |    
T  5459222 ttcgaaaatgttttccattgtgttcgtagcttgatatatcaaaactaaaaatttgactttgaagttagaatttaattatacggctctgcatactagaaga 5459123  T
Q  454 cacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
     ||||||||||||||||||| |||||| |||||| ||||||||||||  ||| ||| | | || |||||| ||||||||||||||||    
T  5459122 aacattagagtacccaattgctctttcgtacattattatcatcaaaacattagagaaactattctaaaactcactttggttcaacaa 5459036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 499
Target Start/End: Original strand, 19650624 - 19650781
Alignment:
Q  343 gcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaat-ttgaatttgaagtcaaaattcaattatatggtcttg 441  Q
    ||||||||||||||||| |||| |||||||| ||||| ||||||||| ||| | ||||||||  |||||| |||||| | ||||||||||||||||| |     
T  19650624 gcttctcttgagtaccaaaatgttttcctttgtgttcagagcttgatatattagaaccaaaaacttgaatctgaagttagaattcaattatatggtcata 19650723  T
Q  442 tgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaa 499  Q
      |||||||| || |||||| |||||||||| || |||| |||||| |||||||||||    
T  19650724 cacacttgaacacgcattagggtacccaatttttatttcatacattattatcatcaaa 19650781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 19648170 - 19648287
Alignment:
Q  19 atagtactagaagattcctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaa 118  Q
    ||||||||||| ||||| |||||||||| | ||||  | | ||||||||  ||| || ||||||||  ||||||||||||||||||||||||||||||||    
T  19648170 atagtactagaggattcatttgcttctttgagaatgatttgttacattctctttacctttgaagtt--ttgtttgtttctacatgtggtcagaagaagaa 19648267  T
Q  119 aaacagtatcatctgaactt 138  Q
    |||||||| |||| ||||||    
T  19648268 aaacagtaccatcagaactt 19648287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 343 - 500
Target Start/End: Original strand, 10677604 - 10677762
Alignment:
Q  343 gcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaa-aatttgaatttgaagtcaaaattcaattatatggtcttg 441  Q
    |||||||||||||||||  ||||||| ||||  |||| |||||| |||| ||| |||||| || |||| |||| |||||||||| |||||||||||| ||    
T  10677604 gcttctcttgagtaccaagatgctttactttgcgttcagagcttaatgtttcagaaccaataacttgactttggagtcaaaatttaattatatggtcatg 10677703  T
Q  442 tgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaa 500  Q
      || || || |||| ||| ||||||||||||||||| | ||| |||||||||| ||||    
T  10677704 cacatttaaacacaccttaaagtacccaattgttcttgcataccttgttatcataaaaa 10677762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 451 - 539
Target Start/End: Complemental strand, 23134990 - 23134902
Alignment:
Q  451 aaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    ||||||||| |||||| || |||||||||| ||||  |||||||||||||| ||| ||| |||||| |||||| ||| |||||||||||    
T  23134990 aaacacattggagtacacacttgttctttcatacaacgttatcatcaaaatcttagagatattgttataaaactcaccttggttcaaca 23134902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 381 - 541
Target Start/End: Original strand, 23183409 - 23183569
Alignment:
Q  381 gagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttc 480  Q
    ||||||||| | ||| |||||||   ||| ||||||||||||||| |||||||||||| ||  |||||||| ||||||||||||  |   ||||||||||    
T  23183409 gagcttgatatctcataaccaaagcctgactttgaagtcaaaatttaattatatggtcatgcacacttgaacacacattagagtgtcaggttgttctttc 23183508  T
Q  481 ttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaag 541  Q
     || ||| ||||||||| || || | |||||||||   |||||||| | | ||||||||||    
T  23183509 ataaattattatcatcagaacttaagagacattgtccaaaaacccattatagttcaacaag 23183569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 540
Target Start/End: Complemental strand, 11739602 - 11739520
Alignment:
Q  458 ttagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |||||||||| |||||||||||| ||  |||||||||||||||  ||| | |||||||| ||||||||  |||||||||||||    
T  11739602 ttagagtacctaattgttctttcatatgttgttatcatcaaaacattagaaacattgttctaaaaccctttttggttcaacaa 11739520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 437
Target Start/End: Complemental strand, 32562522 - 32562340
Alignment:
Q  256 gagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagt 355  Q
    |||||||||| ||||||| | || | | |||| ||||| | |||||||||||| | ||||| | | ||||||||| | ||||  | |||||||||| |||    
T  32562522 gagtcttcaagacatcttatgatgagagcttttactttatgttgacctttctttagatcatctacaaagtcttcagaagtttttaatgcttctcttaagt 32562423  T
Q  356 accataatgctttcctttatgttcggagcttgatgtatcaaaac-caaaatttgaatttgaagtcaaaattcaattatatggt 437  Q
    |||| |||| ||||| ||  ||||  |||||||| | ||| |||  ||||||||| |||||||||| |||| |||||||||||    
T  32562422 accaaaatgttttcccttgcgttcaaagcttgatatgtcagaacaaaaaatttgactttgaagtcagaatttaattatatggt 32562340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 541
Target Start/End: Complemental strand, 39200041 - 39199746
Alignment:
Q  247 ttctcatcggagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgctt 346  Q
    |||||||| |||||||| | | ||||| |||| | || ||| ||||| | |||||| ||||||| || || ||| ||||||| | | |||| || || ||    
T  39200041 ttctcatcagagtcttcgagatatcttttaatcagaattttaactttatgttgaccattcttcaaattatcttccaagtctttagaagttttcaatgttt 39199942  T
Q  347 ctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaat-ttgaatttgaagtcaaaattcaattatatggtcttgtgca 445  Q
     | || |||||||||||||||| |||  || || || |||||||||||| ||||||||  ||||  |||| |||| |||| |||||||||||| ||   |    
T  39199941 ttttt-agtaccataatgcttttcttg-tgctcagaacttgatgtatcagaaccaaaaacttgatattgatgtcagaatttaattatatggtcatgcata 39199844  T
Q  446 cttgaaaac--acattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaag 541  Q
    ||| || ||  ||||||||||| | |||||||| ||| ||||||||||| |||||||  ||| ||| ||| || |||||| |||||  ||||||||||    
T  39199843 cttaaacacgcacattagagtatcaaattgttcattcatacattgttattatcaaaaccttagagatattattctaaaactcacttctgttcaacaag 39199746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 541
Target Start/End: Complemental strand, 39227534 - 39227379
Alignment:
Q  384 cttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttctta 483  Q
    |||||||||||||||||||   ||||  || |||| | |||| |||||||||||| |||  ||||||| |||| |||||||| | |  ||||||||| ||    
T  39227534 cttgatgtatcaaaaccaac--ttgatcttaaagttataatttaattatatggtcatgtatacttgaacacactttagagtatcaatctgttctttcata 39227437  T
Q  484 cattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaag 541  Q
     ||||||||| ||||||  ||| | ||||| || ||||| | ||||||||||||||||    
T  39227436 tattgttatcttcaaaaccttagaaacattattctaaaatcgactttggttcaacaag 39227379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 461 - 540
Target Start/End: Complemental strand, 7681578 - 7681499
Alignment:
Q  461 gagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||||| ||||||||   |||||||||||||||||||  ||| ||| |||||| |||||||||  ||||||||||||    
T  7681578 gagtacccagttgttcttctatacattgttatcatcaaaaccttagagatattgttctaaaacccatcttggttcaacaa 7681499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 256 - 438
Target Start/End: Complemental strand, 32562149 - 32561966
Alignment:
Q  256 gagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagt 355  Q
    |||||||||| ||||||| | || | | |||| ||||| | |||||||||||| | ||||| | | ||||||||| | ||||  | |||||||||| |||    
T  32562149 gagtcttcaagacatcttatgatgagagcttttactttatgttgacctttctttagatcatctaccaagtcttcagaagtttttaatgcttctcttaagt 32562050  T
Q  356 accataatgctttcctttatgttcggagcttgatgtatcaaaac-caaaatttgaatttgaagtcaaaattcaattatatggtc 438  Q
    |||| |||| ||||| ||  ||||  |||||||| | | | |||  ||||||||| |||||||||| |||| ||||||||||||    
T  32562049 accaaaatgttttcccttgcgttcaaagcttgatatgttagaacaaaaaatttgactttgaagtcagaatttaattatatggtc 32561966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 6414626 - 6414700
Alignment:
Q  137 tttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaac 211  Q
    |||||||| || ||||| ||||||||| |||||| ||||||||||| || |||||| | |||||||| |||||||    
T  6414626 tttgaaagcgacgttccatcaaaagaagacaaaattagtcaaagtctcccagactgttaacgtgtccatcagaac 6414700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 540
Target Start/End: Original strand, 3316119 - 3316200
Alignment:
Q  459 tagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||||||||||||||||   |||||| ||||||||||||  ||| |||  ||||| |||||||||  ||||||||||||    
T  3316119 tagagtacccaattgttcttctatacatttttatcatcaaaacattagagattttgttctaaaacccatcttggttcaacaa 3316200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 10677351 - 10677435
Alignment:
Q  87 ttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaact 172  Q
    |||||||||| | || |||||| |||||||| ||||| ||| |||  ||||| ||||||||||||||||||||| || ||||||||    
T  10677351 ttgtttgtttttgcacgtggtcggaagaagacaaacaatatgatcataactt-gaaagtgatgttccttcaaaacaagacaaaact 10677435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 540
Target Start/End: Complemental strand, 7666319 - 7666240
Alignment:
Q  461 gagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||||| ||||||||   |||||||||||||||||||  ||| ||| |||||| |||||||||  |||||| |||||    
T  7666319 gagtacccagttgttcttctatacattgttatcatcaaaaacttagagatattgttctaaaacccatcttggtttaacaa 7666240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 27707368 - 27707331
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaaga 114  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  27707368 ttgaagttctttgtttgtttctacatgtggtcagaaga 27707331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 1675098 - 1675003
Alignment:
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaatttta-tagacattgttttaaaacccactttggttcaaca 539  Q
    |||||||| | ||| |||| || ||||||||||||   |||||| ||||||||||||| ||| ||| |||| || |||||| |||||||||||||||    
T  1675098 cacttgaacaaacaatagaatatccaattgttcttctatacattattatcatcaaaatcttagtag-cattattctaaaactcactttggttcaaca 1675003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 4122646 - 4122570
Alignment:
Q  463 gtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||| ||||||||||||  |||||||||||||| ||||| ||| ||| |||||| || |||  |||||| |||||||    
T  4122646 gtactcaattgttcttttctacattgttatcattaaaatcttagagatattgttctacaactaactttgattcaaca 4122570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 458 - 542
Target Start/End: Original strand, 23662310 - 23662394
Alignment:
Q  458 ttagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaagg 542  Q
    |||| ||| |||||||||||||  |||||||| | ||||||||  ||| ||||||| || ||||||  | |||||||||||||||    
T  23662310 ttagggtatccaattgttcttttatacattgtcagcatcaaaaccttagagacattattctaaaacttattttggttcaacaagg 23662394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 233 - 538
Target Start/End: Original strand, 14761078 - 14761382
Alignment:
Q  233 tccatcaaaacttattctcatcggagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaa 332  Q
    ||||||| | |||||||| ||| ||||||| | |||||||||||||   | |||||||||| | |||| ||||||||||||||   || ||||  |||||    
T  14761078 tccatcagagcttattcttatcagagtctttagaacatcttctaatcggagctttgactttctgttgaactttcttcatatcaacatccaagttctcaaa 14761177  T
Q  333 ggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaat-ttgaatttgaagtcaaaattcaatta 431  Q
     |||||   ||||| |||||||||| ||||||||||||||  || || || ||||||||||| |||||||||  |||| ||||||||||||||| || ||    
T  14761178 agtttcacatgcttttcttgagtacgataatgctttccttg-tgctcagaacttgatgtatctaaaccaaaaacttgactttgaagtcaaaatttaaata 14761276  T
Q  432 tatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttg 531  Q
     || ||||||  |||||||| |||| ||| |||||| ||||| | |||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||    
T  14761277 catagtcttgcacacttgaacacacgttatagtaccaaattgct-tttcatacattgttatcatcaaaattttagagacattgttctaaaacccactatg 14761375  T
Q  532 gttcaac 538  Q
    |||||||    
T  14761376 gttcaac 14761382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 284 - 522
Target Start/End: Original strand, 9188061 - 9188299
Alignment:
Q  284 ctttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggag 383  Q
    |||||| ||| | |||||||||||| |||||||  ||||||| |||| | ||||||| |||||||||||| |||||||||| ||||  || || |  ||     
T  9188061 ctttgattttctgttgacctttctttatatcattctctaagttttcagaagtttccaatgcttctcttgaataccataatgttttctattttgcttagaa 9188160  T
Q  384 cttgatgtatcaaaaccaaa-atttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttctt 482  Q
    |||||  ||||  | ||||| | |||| ||| |||||| |||| |||||||||||| |    |||||||||||||||| || ||| |||| ||| ||| |    
T  9188161 cttgacatatcggagccaaatacttgactttcaagtcacaatttaattatatggtcatacatacttgaaaacacattatagaaccaaattattccttcat 9188260  T
Q  483 acattgttatcatcaaaattttatagacattgttttaaaa 522  Q
    |||||||||||||| | | |||| |||||||||| |||||    
T  9188261 acattgttatcatc-atactttagagacattgttctaaaa 9188299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 4312426 - 4312479
Alignment:
Q  69 atttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaac 122  Q
    ||||||| ||||||||  ||||||||||||||||||||| ||||||||| ||||    
T  4312426 atttgcccttgaagttatttgtttgtttctacatgtggttagaagaagataaac 4312479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 12870024 - 12869976
Alignment:
Q  268 catcttctaataataactttgactttttattgacctttcttcatatcat 316  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| |||||    
T  12870024 catcttctaattagaactttgacattttattgacctttcttcagatcat 12869976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 271 - 540
Target Start/End: Complemental strand, 20817150 - 20816885
Alignment:
Q  271 cttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttcc-agtgcttctcttgagtaccataatgctttc 369  Q
    |||||||| | | |||||||||||| ||||| |||||||| ||||| ||||   |||||||||  |||| |||  |||||||||||||||  ||| |||     
T  20817150 cttctaattagagctttgactttttgttgacatttcttcagatcatcttctctatcttcaaagtcttcctagt--ttctcttgagtaccaatatgattt- 20817054  T
Q  370 ctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtaccca 469  Q
     | | |||||||| |||||||||||| |||||||| |||| |||||| ||| |||| |||| ||||||| ||  ||||| || |||||||| ||||  ||    
T  20817053 -tatctgttcggaacttgatgtatcagaaccaaaacttgactttgaattcagaatttaattttatggtcctgcacacttcaacacacatta-agtattca 20816956  T
Q  470 attgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    ||||||||||| |||||||||||||| ||||  ||| |||||||||| ||||||||||||| |||||||||    
T  20816955 attgttctttcatacattgttatcattaaaacattagagacattgttctaaaacccactttagttcaacaa 20816885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 541
Target Start/End: Complemental strand, 22669276 - 22669013
Alignment:
Q  279 aataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgtt 378  Q
    |||| |||||| ||| | |||||||||| |   ||||| ||||||||||||| | |||| || ||||||||||| ||| ||||||| ||||| || || |    
T  22669276 aatagctttgaatttatgttgacctttcattggatcatcttctaagtcttcagaagttttcaatgcttctcttgcgtatcataatgttttccattgtgct 22669177  T
Q  379 cggagcttgatgtatcaaaaccaaaat-ttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttct 477  Q
    |  |  ||||||||||| ||||||||  ||||  |||||||||||||| |||||||||||| ||  |||||||| | | ||||||||||| |||| ||||    
T  22669176 caaaatttgatgtatcataaccaaaaacttgaccttgaagtcaaaatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttct 22669077  T
Q  478 ttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaag 541  Q
    ||| |||||||||||||| ||||  ||  | ||||| || |||||||||||||  |||||||||    
T  22669076 ttcatacattgttatcataaaaaccttgaaaacattattctaaaacccactttaattcaacaag 22669013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 34488162 - 34488672
Alignment:
Q  19 atagtactagaagattcctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtc-agaagaaga 117  Q
    ||||||||||| |  ||||||| ||||| | ||||  || |||||||||  |||| ||||||||||  |||||||||||| || || ||| | || ||||    
T  34488162 atagtactagaggggtcctttgattctttgtgaatgatccattacattctctttgtcattgaagttctttgtttgtttctgcacgtcgtcaaaaaaaaga 34488261  T
Q  118 aaaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacatactt 217  Q
     ||||| ||  ||| | |||||||||  || ||||||||| ||||| |||||||| |||| |||||   |||||| |||| ||| ||||||||| | ||     
T  34488262 caaacaatactatcagcactttgaaaacgacgttccttcataagaagacaaaactggtcagagtcattcagactgatgacatgtgcttcagaactttctc 34488361  T
Q  218 ccttcagagtctaactccatcaaaacttattctcatcggagtcttcaaaa-------catcttctaataataactttgactttttattgacctttcttca 310  Q
    |||||||||| | ||||||||| | ||| |||||||  |||  ||||| |       |||||||| || | |  ||||||||||  ||||| ||||||||    
T  34488362 ccttcagagtatgactccatcagagcttgttctcattagagcattcaagacttgatgcatcttctgatcagagatttgacttttcgttgacttttcttca 34488461  T
Q  311 tatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaa-tttga 409  Q
     || || |||||  |||||| | ||| | | || |||| |||||||||| | |||||| |||| | ||| ||||||||||||||| ||||||||  ||||    
T  34488462 gataatcttctagttcttcagaagttactaatgtttcttttgagtaccaaattgcttttctttgtattcagagcttgatgtatcataaccaaaagcttga 34488561  T
Q  410 atttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttataga 509  Q
      | ||||||||||||||||| |||||          ||||| ||||||||||||| | |||||||||||| ||| || |||||||||||| | || | |    
T  34488562 cctcgaagtcaaaattcaatt-tatgg----------ttgaacacacattagagtatcaaattgttctttcataccttattatcatcaaaactctagata 34488650  T
Q  510 cattgttttaaaacccactttg 531  Q
    ||||||| ||||||||||||||    
T  34488651 cattgttctaaaacccactttg 34488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 256 - 539
Target Start/End: Original strand, 11833486 - 11833770
Alignment:
Q  256 gagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagt 355  Q
    |||||||||| ||| ||||  || ||||||||||  || | |||||||||||||  ||||| |||||||| || | |  |||||  ||||||||| |||     
T  11833486 gagtcttcaagacaccttccgatcataactttgatgttatgttgacctttcttctaatcatcttctaagtattaagacatttccgatgcttctctagagc 11833585  T
Q  356 accataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaat-ttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaac 454  Q
    |  | | || |||||||| ||||| ||  ||||||||||| ||||||||  |||| ||||||||||||||| | ||||| || | ||  || ||||| ||    
T  11833586 aagaaattgttttcctttgtgttcagaatttgatgtatcagaaccaaaaacttgactttgaagtcaaaatttacttatacggccatgcacaattgaacac 11833685  T
Q  455 acattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    ||||||||||  | |||| || |||| ||| || ||||||| |||| |||| ||||||||||||||||| |||||||||||||||    
T  11833686 acattagagtttcaaattattttttcatacgttattatcattaaaactttagagacattgttttaaaactcactttggttcaaca 11833770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 12900713 - 12900261
Alignment:
Q  19 atagtactagaagattcctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaa 118  Q
    ||||||||||| || ||||||||||||| ||||||  | | ||||||||  ||| |||||||| ||  |||||||||| | ||||||||||||||||||     
T  12900713 atagtactaga-gagtcctttgcttctttgggaatgatttgttacattctcttttccattgaaattctttgtttgtttttgcatgtggtcagaagaagac 12900615  T
Q  119 aaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgt-ccttcagaacatactt 217  Q
    ||||| |   ||  |||||| |||||  ||||||||||| | ||| | ||||||||||| |||| || |  || |||||  || |||||||||| | |||    
T  12900614 aaacaattcgataagaactt-gaaagcaatgttccttcagatgaagaaaaaactagtcagagtctcccaagctactgacacgttccttcagaacttgctt 12900516  T
Q  218 ccttcagagtctaactccatcaaaacttattctcatcggagtcttcaaaac-------atcttctaataataactttgacttttta-ttgacctttcttc 309  Q
    |||||| || || | | | |||  |||| || ||||| |||||||||||||       || || | || | |||||| |||||||  |||||||||||||    
T  12900515 ccttcaaagactgatttcgtcatcacttgttttcatcagagtcttcaaaacttgatgcatattatgatcagaactttaacttttttgttgacctttcttc 12900416  T
Q  310 atatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttga 409  Q
    | ||||| ||||||||||| | | || | ||   ||||| |||||||||| | |||||||||||   |||  |||||||||||||||||||||||||| |    
T  12900415 agatcatcttctaagtctttagaagtcttcaaaacttcttttgagtaccaaagtgctttcctttgcattcatagcttgatgtatcaaaaccaaaatttaa 12900316  T
Q  410 atttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagt 464  Q
     ||| ||||||||||| |||||||| ||| ||  ||||| ||  |||||||||||    
T  12900315 ctttaaagtcaaaatttaattatattgtcatgcacacttaaacgcacattagagt 12900261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 444 - 534
Target Start/End: Complemental strand, 36754964 - 36754874
Alignment:
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggtt 534  Q
    |||||||| || | |||||||| |||||||||||||| ||||||||||||||||||| |||| ||| |||||| |||||||||||||||||    
T  36754964 cacttgaacacgcgttagagtatccaattgttctttcatacattgttatcatcaaaactttagagatattgttctaaaacccactttggtt 36754874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 438
Target Start/End: Complemental strand, 12893062 - 12892968
Alignment:
Q  344 cttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtc 438  Q
    ||||| |||||||||| ||| ||||||||| ||||   |||||||||||||| ||||||||  ||| ||||||||||||||| ||||||||||||    
T  12893062 cttcttttgagtaccaaaatactttcctttgtgtttctagcttgatgtatcagaaccaaaacatgactttgaagtcaaaatttaattatatggtc 12892968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 539
Target Start/End: Complemental strand, 12889330 - 12889220
Alignment:
Q  427 aattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaaccca 526  Q
    |||||||| ||||||  |||||||| |||||||||||||||||||  || |||  |||| | |||| || ||||| ||| |||||||||| |||||||||    
T  12889330 aattatatagtcttgcacacttgaacacacattagagtacccaat--ttttttgatacactattataataaaaatcttagagacattgttctaaaaccca 12889233  T
Q  527 ctttggttcaaca 539  Q
     ||| ||||||||    
T  12889232 atttagttcaaca 12889220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 540
Target Start/End: Complemental strand, 17048148 - 17048052
Alignment:
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |||||||| |||||||| | || ||||||||| |||| |||||| |||||| |||||  ||| | | |||||| |||||| ||||||||||||||||    
T  17048148 cacttgaacacacattaaaatatccaattgttatttcatacatttttatcaacaaaaccttagatatattgttctaaaactcactttggttcaacaa 17048052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 17048324 - 17048220
Alignment:
Q  19 atagtactagaagattcctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaa 118  Q
    |||||||| || || ||||||| ||||||||||||  ||| ||||||||  ||||||||||||  |   |||||||||||||| |||||||||| ||||     
T  17048324 atagtacttgaggagtcctttgtttcttagggaatgatctgttacattctctttgccattgaatatctatgtttgtttctacacgtggtcagaaaaagac 17048225  T
Q  119 aaaca 123  Q
    |||||    
T  17048224 aaaca 17048220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 22669371 - 22669291
Alignment:
Q  159 aagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacatacttccttcagagtctaactccatca 239  Q
    |||||||||||||| |||| ||||||| |||||| |||||||||| || |||| || |||||| ||||||| | |||||||    
T  22669371 aagaacacaaaactggtcagagtcacccagactgttgacgtgtccatccgaacttatttcctttagagtctgagtccatca 22669291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 11833311 - 11833446
Alignment:
Q  36 ctttgcttcttagggaatagtctattacattccatttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaa 135  Q
    ||||||||||||||||||  | | ||||||||  |||| ||||||||||  |||||| ||| | ||   ||||| ||||||| ||||| ||  ||| |||    
T  11833311 ctttgcttcttagggaatgatatgttacattctctttgtcattgaagttctttgtttatttttgcacaaggtcaaaagaagacaaaca-tactatcagaa 11833409  T
Q  136 ctttgaaagtgatgttccttcaaaagaacacaaaact 172  Q
    |||| ||||||||||||||| | ||||| ||||||||    
T  11833410 ctttaaaagtgatgttcctttagaagaagacaaaact 11833446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 10751559 - 10751607
Alignment:
Q  467 ccaattgttctttcttacattgttatcatcaaaattttatagacattgt 515  Q
    |||||||||||||  ||| ||||||||||||||| |||| |||||||||    
T  10751559 ccaattgttctttaatactttgttatcatcaaaactttagagacattgt 10751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 40817276 - 40817192
Alignment:
Q  216 ttccttcagagtctaactccatcaaaacttattctcatcggagtcttcaaaacatcttctaataataactttgactttttattga 300  Q
    |||||||||||  ||| ||||||| | ||| ||||| || |||||||||| ||||||||| || | | |||||||||||| ||||    
T  40817276 ttccttcagaggttaaatccatcagagcttgttctcgtcagagtcttcaagacatcttctgatcaaagctttgactttttgttga 40817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 150 - 359
Target Start/End: Complemental strand, 16687444 - 16687236
Alignment:
Q  150 ttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtccttcagaacat--acttccttcagagtctaactccatcaaaacttat 247  Q
    |||||||| ||||| ||||| ||  ||| |||||| ||||||||||||||||| ||||||||||  | |||||| | || |  | ||||||||||||| |    
T  16687444 ttccttcagaagaagacaaatctgatcagagtcactaagactgctgacgtgtc-ttcagaacatgtaattccttaa-agccgca-tccatcaaaacttgt 16687348  T
Q  248 tctcatcggagtcttcaaaacatcttctaataataactttgactttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttc 347  Q
    |||||||  |||||| ||||||| |||| || | | |||||||||||| ||||| | |||||||||||| || |||||||||| | ||||||| ||||||    
T  16687347 tctcatcaaagtcttaaaaacatattctgatcagagctttgactttttgttgacttatcttcatatcatcttataagtcttcagaagtttccaatgcttc 16687248  T
Q  348 tcttgagtacca 359  Q
    ||||||||||||    
T  16687247 tcttgagtacca 16687236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 412 - 537
Target Start/End: Complemental strand, 11848385 - 11848260
Alignment:
Q  412 ttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagaca 511  Q
    ||||||| ||| || |||||| ||||| |  ||||||||| |||||||| | |||| |||||||||||| |||| ||||||||||||||  ||| |||||    
T  11848385 ttgaagttaaactttaattatttggtcattcgcacttgaacacacattataataccaaattgttctttcatacaatgttatcatcaaaaccttagagaca 11848286  T
Q  512 ttgttttaaaacccactttggttcaa 537  Q
    ||||| ||||||||||||||||||||    
T  11848285 ttgttgtaaaacccactttggttcaa 11848260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 385 - 485
Target Start/End: Complemental strand, 16687229 - 16687129
Alignment:
Q  385 ttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttac 484  Q
    ||||||||||| |||||||| |||  ||| |||||| |||| |||| ||||||||||  ||||| || |||||||||||||||||||| ||||||| |||    
T  16687229 ttgatgtatcataaccaaaagttgtctttcaagtcataatttaattctatggtcttgcacacttaaacacacattagagtacccaattattctttcatac 16687130  T
Q  485 a 485  Q
    |    
T  16687129 a 16687129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 540
Target Start/End: Complemental strand, 24559024 - 24558950
Alignment:
Q  466 cccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |||| |||||||||| |||||| ||||||||||||  ||| |||||||||| ||||||||||||||||| |||||    
T  24559024 cccagttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaacaa 24558950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 540
Target Start/End: Complemental strand, 24600056 - 24599982
Alignment:
Q  466 cccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |||| |||||||||| |||||| ||||||||||||  ||| |||||||||| ||||||||||||||||| |||||    
T  24600056 cccagttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaacccactttggttaaacaa 24599982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 19990516 - 19990600
Alignment:
Q  87 ttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaact 172  Q
    |||||||||||| || ||||| ||||||||| ||||||||  ||  |||| ||||||| || ||||||||| ||||| ||||||||    
T  19990516 ttgtttgtttcttcacgtggttagaagaagacaaacagtacgattagaac-ttgaaagcgacgttccttcagaagaagacaaaact 19990600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 37390308 - 37390348
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaagaaga 117  Q
    ||||||||  |||||||||||| ||||||||||||||||||    
T  37390308 ttgaagttctttgtttgtttctgcatgtggtcagaagaaga 37390348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 457 - 540
Target Start/End: Complemental strand, 23528423 - 23528340
Alignment:
Q  457 attagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |||| |||||||||||||||||||  ||||||||||||||||||  ||| |||||||||| |||||| ||||||||||||||||    
T  23528423 attatagtacccaattgttctttcagacattgttatcatcaaaaccttagagacattgttctaaaactcactttggttcaacaa 23528340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 538
Target Start/End: Complemental strand, 4597079 - 4596832
Alignment:
Q  291 tttttattgacctttcttcatatcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatg 390  Q
    ||||| || ||||||||||||||||| || ||| | || | | ||||||| ||||| ||||   ||||| |||| |||||||||||||| |||| ||||     
T  4597079 tttttgttaacctttcttcatatcatcttttaatttttaagaagtttccaatgcttttctttgttaccaaaatgatttcctttatgttcagagcctgata 4596980  T
Q  391 tatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgtt 490  Q
    |||||  ||| ||| || |  || || | |||||| |||| |||||| |||  ||| |||| ||||||||||||| |||| | ||||||  || ||| |     
T  4596979 tatcaggacctaaacttaacctttaattgaaaatttaattttatggttttgcacacctgaacacacattagagtatccaaatattcttttatatattatc 4596880  T
Q  491 atcatcaaaattttatagacattgttttaaaacccactttggttcaac 538  Q
    |||||  ||| |||| ||||||| || ||||||||||||| |||||||    
T  4596879 atcatttaaactttaaagacattattctaaaacccactttagttcaac 4596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 526
Target Start/End: Complemental strand, 2120296 - 2120113
Alignment:
Q  344 cttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaa-tttgaatttgaagtcaaaattcaattatatggtcttgt 442  Q
    ||||||||||||| || ||||||||| |||  ||||  || ||||||| ||| || |||   ||||| ||||| |||| |||| |||||||| |||||      
T  2120296 cttctcttgagtatcaaaatgctttcttttgcgttctaagtttgatgtttcagaaacaatgctttgactttgatgtcataatttaattatattgtctttc 2120197  T
Q  443 gcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaaccca 526  Q
     |||||| | |  |||||||||||  |||| ||||||| |||||||||||||| ||||| ||| ||||||||||  ||||||||    
T  2120196 acacttggacatccattagagtactaaattattctttcatacattgttatcataaaaatcttagagacattgttcaaaaaccca 2120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 538
Target Start/End: Complemental strand, 4698803 - 4698579
Alignment:
Q  312 atcatgttctaagtcttcaaaggtttccagtgcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaat 411  Q
    ||||| |||||| |||||| | ||||||| ||  | |||| ||||||| |||| |||||||||||||  |||| |||||||||||  |||||| | |       
T  4698803 atcatcttctaaatcttcagaagtttccaatgtgtttctttagtaccaaaatgatttcctttatgtttagagcatgatgtatcaa--ccaaaactgggca 4698706  T
Q  412 ttgaagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagaca 511  Q
    || || ||| |||| |||| |||||| |||  |||||||| | |||||||||||  ||||||||||||   ||| || |||||| || | |||| |||||    
T  4698705 tttaaatcataatttaattttatggttttgcacacttgaacatacattagagtattcaattgttcttttacacaatgctatcattaatactttaaagaca 4698606  T
Q  512 ttgttttaaaacccactttggttcaac 538  Q
    || || ||||| |||| ||||||||||    
T  4698605 ttattctaaaatccaccttggttcaac 4698579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 537
Target Start/End: Original strand, 27175613 - 27175679
Alignment:
Q  471 ttgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaa 537  Q
    |||||||||| | || ||||||||||||||  ||||||| |||||||| ||||||||||| ||||||    
T  27175613 ttgttctttcatgcactgttatcatcaaaaccttatagagattgttttgaaacccacttttgttcaa 27175679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 17637542 - 17637502
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaagaaga 117  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  17637542 ttgaagttctttgtttgtttctacatgtggtcagaagaaga 17637502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 27686187 - 27686254
Alignment:
Q  469 aattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaa 537  Q
    |||||||| ||| |||||||||| ||||||||||||| |||||| | ||||||||| | ||||||||||    
T  27686187 aattgttcgttcatacattgttaacatcaaaattttaaagacatcg-tttaaaacctattttggttcaa 27686254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 458 - 526
Target Start/End: Original strand, 2906526 - 2906594
Alignment:
Q  458 ttagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaaccca 526  Q
    |||||||| |||||| |||||   ||||||||||||||||||| |||| ||||||| || |||| ||||    
T  2906526 ttagagtatccaattattcttctatacattgttatcatcaaaactttagagacattattgtaaatccca 2906594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 516
Target Start/End: Complemental strand, 9829018 - 9828954
Alignment:
Q  452 aacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgtt 516  Q
    ||||||||||  || | |||||||||||  ||||||||||||||||||| ||||  |||||||||    
T  9829018 aacacattagcatatctaattgttcttttatacattgttatcatcaaaactttagggacattgtt 9828954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 344 - 539
Target Start/End: Original strand, 18114987 - 18115181
Alignment:
Q  344 cttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaatttgaagtcaaaattcaattatatggtcttgtg 443  Q
    |||||||||||||||| || ||||||||||  ||||   ||||||| ||||  ||| |||| |||| ||||| |||| |||| |||||||| ||| ||      
T  18114987 cttctcttgagtaccaaaa-gctttcctttgcgttcaatgcttgatatatcggaactaaaacttgactttgaggtcataatttaattatatagtcatgca 18115085  T
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||||  |||||||||||||||||||| ||||||  ||| |||||||||||||||  ||| | | ||||| ||||| |||||||| | ||||||    
T  18115086 cacttgagcacacattagagtacccaattattcttttatacgttgttatcatcaaaaccttagaaaaattgtgttaaaccccactttagatcaaca 18115181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 540
Target Start/End: Complemental strand, 35512015 - 35511819
Alignment:
Q  345 ttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaaaatttgaa-tttgaagtcaaaattcaattatatggtcttgtg 443  Q
    |||| |||| |||||||||||||| | || |  || || |||||||||| | ||||||||  | || |||||| ||| |||| ||| ||||||||||||     
T  35512015 ttcttttgaataccataatgcttttcattgtcctcagaacttgatgtataagaaccaaaaacttaactttgaaatcataatttaatcatatggtcttgta 35511916  T
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
     ||||||| | ||||||||||| | |||| ||||||  ||||| |||||||||||||  ||| | |||||||| |||||| ||||||| ||||||||    
T  35511915 tacttgaacatacattagagtatcaaattattcttttatacatcgttatcatcaaaacattaaaaacattgttctaaaactcactttgattcaacaa 35511819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 415 - 500
Target Start/End: Complemental strand, 21538551 - 21538466
Alignment:
Q  415 aagtcaaaattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaa 500  Q
    |||||| |||| ||||||||||||||   || ||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  21538551 aagtcagaatttaattatatggtctttcccaattgaacacacaatagagtaccaaattgttctttcatacattgttatcatcaaaa 21538466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 18114776 - 18114937
Alignment:
Q  103 gtggtcagaagaagaaaaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagactgctgacgtgtc 202  Q
    ||||||||||||||| ||||| ||  ||| |||||| |||||    ||||||| ||||||| |||||||||| || |||| |  ||| ||||||||||||    
T  18114776 gtggtcagaagaagacaaacactacgatcagaactt-gaaagcagcgttcctttaaaagaagacaaaactaggcagagtctcttagaatgctgacgtgtc 18114874  T
Q  203 cttcagaacatacttccttcagagtctaactccatcaaaacttattctcatcggagtcttcaa 265  Q
    |||||||   | |||||||| ||||| || ||||| | ||||| |||||||| ||||||||||    
T  18114875 cttcagatattgcttccttcggagtccaattccattagaacttgttctcatcagagtcttcaa 18114937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 447 - 536
Target Start/End: Complemental strand, 16748142 - 16748054
Alignment:
Q  447 ttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttca 536  Q
    ||||| |||||||||||||  ||| ||||||||| |||||| ||||||||||||| ||| | |||||||| ||||||||| |||||||||    
T  16748142 ttgaacacacattagagtattcaactgttctttcatacattattatcatcaaaatcttagaaacattgttctaaaaccca-tttggttca 16748054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 539
Target Start/End: Original strand, 24386339 - 24386456
Alignment:
Q  422 aattcaattatatggtcttgtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaa 521  Q
    |||| |||| ||||||| ||  |||||||| |||||||| | |||  |||||||||||| |||||| ||||||| ||||  |||  || |||||| ||||    
T  24386339 aatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaaccttagggatattgttctaaa 24386438  T
Q  522 acccactttggttcaaca 539  Q
    ||||||||||||||||||    
T  24386439 acccactttggttcaaca 24386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 35512222 - 35512088
Alignment:
Q  91 ttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaaactagtcaaagtcaccaagac 190  Q
    |||||||||||  ||||||||||| || ||||||||  ||| |||||| ||||| ||  |||| ||| ||||| ||||| || |||| ||||||  ||||    
T  35512222 ttgtttctacacatggtcagaagacgacaaacagtactatcagaactt-gaaagcgacattccatcagaagaaaacaaatctggtcagagtcactcagac 35512124  T
Q  191 tgctgacgtgtccttcagaacatacttccttcagag 226  Q
    || || || ||||||||| |||| ||||||||||||    
T  35512123 tgttgtcgcgtccttcaggacatgcttccttcagag 35512088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 30462725 - 30462826
Alignment:
Q  70 tttgccattgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaacagtatcatctgaactttgaaagtgatgttccttcaaaagaacacaaa 169  Q
    |||||||||||||||  || |||||| || ||||| |||||||||||| ||||||||  ||| ||||||||||| |||  |||||| | ||||| |||||    
T  30462725 tttgccattgaagttctttatttgttactgcatgtagtcagaagaagacaaacagtactatcagaactttgaaa-tgacattcctttagaagaaaacaaa 30462823  T
Q  170 act 172  Q
    |||    
T  30462824 act 30462826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 13896940 - 13897011
Alignment:
Q  467 ccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||| |||||||  || ||||||||||||||| || | |||||||| ||||||||||| ||||||||||||    
T  13896940 ccaatttttctttcaaactttgttatcatcaaaacttaagagacattg-tttaaaacccattttggttcaaca 13897011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 14037557 - 14037628
Alignment:
Q  467 ccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaaca 539  Q
    |||||| |||||||  || ||||||||||||||| || | |||||||| ||||||||||| ||||||||||||    
T  14037557 ccaatttttctttcaaactttgttatcatcaaaacttaagagacattg-tttaaaacccattttggttcaaca 14037628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 28232129 - 28232188
Alignment:
Q  444 cacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattt 503  Q
    ||||||| || || ||||||||| ||||||||||||  || |||||||||||||||||||    
T  28232129 cacttgagaaaactttagagtactcaattgttcttttatatattgttatcatcaaaattt 28232188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 16587142 - 16587097
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaagaagaaaaac 122  Q
    ||||||||  |||||||||| |||||||||||||||||||| ||||    
T  16587142 ttgaagttcattgtttgtttgtacatgtggtcagaagaagacaaac 16587097  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 27765651 - 27765611
Alignment:
Q  77 ttgaagttgcttgtttgtttctacatgtggtcagaagaaga 117  Q
    ||||||||  ||||||||||||||| |||||||||||||||    
T  27765651 ttgaagttctttgtttgtttctacacgtggtcagaagaaga 27765611  T

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Target: scaffold0466 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 343 - 540
Target Start/End: Complemental strand, 4510 - 4311
Alignment:
Q  343 gcttctcttgagtaccataatgctttcctttatgttcggagcttgatgtatcaaaaccaa-aatttgaatttgaagtcaaaattc-aattatatggtctt 440  Q
    |||||||||| |||||| ||| ||||| ||| | ||  ||||||||||| |||||| ||| || |||| | |||| | | ||||  |||||||||||| |    
T  4510 gcttctcttgggtaccaaaatactttcatttttctttagagcttgatgtttcaaaatcaataagttgactatgaatttagaattttaattatatggtcct 4411  T
Q  441 gtgcacttgaaaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaacccactttggttcaacaa 540  Q
    |  |||| ||| | ||||||||||| ||||||||| |||  ||| |||||| ||||| |||  ||||||||||||| ||||||||||||||||| |||||    
T  4410 gcacactcgaacatacattagagtatccaattgttattttatactttgttaacatcagaatcatatagacattgttctaaaacccactttggtttaacaa 4311  T

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