View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_high_14 (Length: 249)
Name: NF5552_high_14
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32024100 - 32024332
Alignment:
| Q |
1 |
caaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttgattttatttggagaaacaaacacgtccctagtgttg |
100 |
Q |
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| T |
32024100 |
caaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttgattttatttggagaaacaaacacgtccctagtattg |
32024199 |
T |
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| Q |
101 |
tcttgattccnnnnnnngtaagaaaggattttatttgatcaacaacttatagcaacactattagtggccaattctgtttaagttctctaattacattaaa |
200 |
Q |
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| T |
32024200 |
tcttgattccaaaaaaagtaagaaaggattttatttgatcaacaacttatagcaacactattagtggccaattctgtttaagttctctaattacattaaa |
32024299 |
T |
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| Q |
201 |
acatttgtaaccgataattaaagtgtgaatatt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32024300 |
acatttgtaaccgataattaaagtgtgaatatt |
32024332 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 9602783 - 9602734
Alignment:
| Q |
15 |
atcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
64 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
9602783 |
atcccaatcaaagtgaatactaaatgcatcttgtcttgctcccaaggttg |
9602734 |
T |
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