View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_high_2 (Length: 451)
Name: NF5552_high_2
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 10883794 - 10883366
Alignment:
| Q |
17 |
actacaagacaaaaaatgtgatataaaatttattgacatgctaaaagagtgagttaatataagtgtgatgttttggcacaaatgacggttttcgacagat |
116 |
Q |
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| T |
10883794 |
actacaagacagaaaatgtgatataaaatttattgacatgctaaaagagtgagttaatataagtgtaatgttttggcacaaatgatggttttcgacagat |
10883695 |
T |
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| Q |
117 |
gatttggttagatatttatttttcttctctacttcaggttgagtcaaatataagtttgcattatcttggaacatgtatcatgcatttagaaatctacaac |
216 |
Q |
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| T |
10883694 |
gatttggttagatatttatttttcttctctatttcaggttgagtcaaatataagtttgcattatcttggaacatgtatcatgcatttagaaatctacaac |
10883595 |
T |
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| Q |
217 |
gtgcagcaaataaccttcgtgaaatgtactattttcacaactttgaactacattagaattattttataaaattttcacggtttctcttgttgtccatttc |
316 |
Q |
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| T |
10883594 |
gtgcagcaaataaccttcgtgaaatgtactattttcacaactttgaactacattagaattattttataaaatttgcacggtttctcttgttgtccatttc |
10883495 |
T |
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| Q |
317 |
aaatacgtaattcttatgagttggaacaatgagatagcagttaatggttactgccattnnnnnnnngttaatggttccttaccttttcagctaagaaaac |
416 |
Q |
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| T |
10883494 |
aaatacgtaattcttatgagttggaacaatgagatagcagttaatggttactgccattaaaaaaaagttaatggttccttaccttttcagctaagaaaac |
10883395 |
T |
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| Q |
417 |
gccttgtctttcttcatttgtggtctctg |
445 |
Q |
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| T |
10883394 |
gccttgtctttcttcatttgtggtttctg |
10883366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 10852116 - 10852052
Alignment:
| Q |
383 |
gttaatggttccttaccttttcagctaagaaaacgccttgtctttcttcatttgtggtctctgct |
447 |
Q |
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| T |
10852116 |
gttaatagttccttaccttttcagctaagaaaactgcttgtctttcttcatttgtggtttctgct |
10852052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 10852174 - 10852111
Alignment:
| Q |
297 |
tttctcttgttgtccatttcaaatacgtaattcttatgagttggaacaatgagatagcagttaat |
361 |
Q |
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| T |
10852174 |
tttctcttgatgtcaattt-aaatatgtaattcttatgtgttggaacaattggatagcagttaat |
10852111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 34259038 - 34258879
Alignment:
| Q |
84 |
atgttttggcacaaatgacggttttcgacagatgatttggttagatatttatttttcttctctacttcaggttgagtcaaatataagtttgcattatctt |
183 |
Q |
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||||||||||||||| ||| | || | | |||||||||||| | | || |||||| |||| || ||||||| |||||| |||||||||||| | || || |
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| T |
34259038 |
atgttttggcacaaaagacagcctttgtcggatgatttggttggctcttcattttttttctttatttcaggtagagtcagatataagtttgcgtcatttt |
34258939 |
T |
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| Q |
184 |
ggaacatgtatcatgcatttagaaatctacaacgtgcagcaaataaccttcgtgaaatgt |
243 |
Q |
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| T |
34258938 |
ggaacaggaatcatgcagttagaagtctacaacgtgctgtaaagaacttccgtgaaatgt |
34258879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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