View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_high_3 (Length: 449)
Name: NF5552_high_3
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 35578377 - 35577959
Alignment:
| Q |
13 |
tcatcaataccaccttgagtaatggttgcttcaatcaatatcgtataagttatagccgtcggcttacaattatctttcaacaactgatccataaccctta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35578377 |
tcatcaataccaccttgagtaatggttgcttcaatcaatatcgtataagttataaccgtcggcttacaattatctttcaacaactgatccataaccctta |
35578278 |
T |
|
| Q |
113 |
aagccaaatcaagcctgccccttccacaaaaattgccaatcaaaatattataagtaacaacgtcaggctcaaagcctctctttttcattctatcaagcac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35578277 |
aagccaaatcaagcctgccccttccacaaaaattgccaatcaaaatattataagtaacaacatcaggctcaaagcctctctttttcattctatcaagcac |
35578178 |
T |
|
| Q |
213 |
cttactagcatgatcaactctatcagctttacaaaacccacttataactgcattgtaagcaaaaacatcaggctcaccgtgcttctcaagaatctccata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35578177 |
cttactagcatgatcaactctatcagctttacaaaacccacttataactgcattgtaagcaaaaacatcaggcttaccgtgcttctcaagaatctccata |
35578078 |
T |
|
| Q |
313 |
acctgaatcgctttttcgatctttttcatattnnnnnnncccttgatcaatttagtgcaaagaataacatcaggtttataaccacgattaaccatgtgtt |
412 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35578077 |
acctgaatcgctttttcgatctttttcatattaaaaaaacccttgatcaatttagtgcaaagaataacatcaggtttataaccacgattaaccatgtgtt |
35577978 |
T |
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| Q |
413 |
gaagaaagtataaagattc |
431 |
Q |
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| T |
35577977 |
gaagaaagtataaagattc |
35577959 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 43843778 - 43843810
Alignment:
| Q |
353 |
ccttgatcaatttagtgcaaagaataacatcag |
385 |
Q |
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| T |
43843778 |
ccttgatcaatttagtacaaagaataacatcag |
43843810 |
T |
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