View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_high_6 (Length: 350)
Name: NF5552_high_6
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 33050900 - 33051224
Alignment:
| Q |
10 |
attattcttctgtaattttaccaatgtttcttaggtatatccaagttggatttaatttagtgtctttatgtttcaaatttatcattgttggttcaaactt |
109 |
Q |
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| T |
33050900 |
attattcttctgtaattttaccaatgtttcttaggtatatccaagttggatttaatttagtgtctttatgtttcaaatttatcattgttggttcaaactt |
33050999 |
T |
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| Q |
110 |
gtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattttatgggctgtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051000 |
gtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattttatgggctgtg |
33051099 |
T |
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| Q |
210 |
atgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcccttcattatcacaccctttga |
309 |
Q |
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| T |
33051100 |
atgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataattttctcatacccaatatttttctgagcccttcattatcacaccctttga |
33051199 |
T |
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| Q |
310 |
gtttttgcagctatatctaatttat |
334 |
Q |
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| T |
33051200 |
gtttttgcagctatatctaatttat |
33051224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 33032816 - 33032936
Alignment:
| Q |
170 |
tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctca |
267 |
Q |
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| T |
33032816 |
tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctca |
33032915 |
T |
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| Q |
268 |
tacccaatatttttctgagcc |
288 |
Q |
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|||||| |||||||||||||| |
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| T |
33032916 |
tacccattatttttctgagcc |
33032936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 8264038 - 8264132
Alignment:
| Q |
197 |
tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt |
291 |
Q |
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| T |
8264038 |
tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt |
8264132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 8277456 - 8277550
Alignment:
| Q |
197 |
tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt |
291 |
Q |
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| T |
8277456 |
tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt |
8277550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 9901098 - 9901029
Alignment:
| Q |
218 |
tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc |
288 |
Q |
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| T |
9901098 |
tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcatacccattatttttctgagcc |
9901029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 7975171 - 7975255
Alignment:
| Q |
203 |
ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc |
288 |
Q |
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|||| |||||| |||||||||||||||||||||||| |||| || | ||||||||| ||||| ||||||| |||||||| ||||| |
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| T |
7975171 |
ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc |
7975255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 13838239 - 13838155
Alignment:
| Q |
203 |
ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc |
288 |
Q |
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|||| |||||| |||||||||||||||||||||||| |||| || | ||||||||| ||||| ||||||| |||||||| ||||| |
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| T |
13838239 |
ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc |
13838155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 26543796 - 26543712
Alignment:
| Q |
203 |
ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc |
288 |
Q |
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|||| |||||| |||||||||||||||||||||||| |||| || | ||||||||| ||||| ||||||| |||||||| ||||| |
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| T |
26543796 |
ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc |
26543712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 1293892 - 1293814
Alignment:
| Q |
203 |
ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttc |
282 |
Q |
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|||| |||||| |||||||||||||||||||||||| |||| || | ||||||||| ||||| ||||||| |||||||| |
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| T |
1293892 |
ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttc |
1293814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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