View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_high_7 (Length: 348)
Name: NF5552_high_7
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 384494 - 384811
Alignment:
| Q |
18 |
aatggctggataatctagtttgctggattcttagaagctttttatcttatgacgtaatttggagagtttatgctgtcctcgtcatgaactatgatcggat |
117 |
Q |
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| T |
384494 |
aatggctggataatctagtttgctggattcttagaagctttttatcttatgacgtaatttggagagtttatgctgtcctcgtcatgaaccatgatcggat |
384593 |
T |
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| Q |
118 |
agttgaaattagtctttcaagtattccaacaactgaggattattcttgtgattaatctaaataacatcaataggctgtggacttcgttgtcaatggaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384594 |
agttgaaattagtctttcaagtattccaacaactgaggattattcttgtgattaatctaaataacatcaataggctgtggacttcgttgtcaatggaaaa |
384693 |
T |
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| Q |
218 |
aactattatctccttagacttattagagaagattagaagagcaatgctgctgattccataggttgatatttccctgatttaagactatccgactaggaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
384694 |
aactattatctccttagacttattagagaagaatagaagagcaatgctgctgattccataggttgatatttccctgatttaggactatccgacttggaaa |
384793 |
T |
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| Q |
318 |
attaatttactatgagaa |
335 |
Q |
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|||||||||||||||||| |
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| T |
384794 |
attaatttactatgagaa |
384811 |
T |
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