View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_high_9 (Length: 325)
Name: NF5552_high_9
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 44868873 - 44868576
Alignment:
| Q |
11 |
caaaggatcacggggaatagaatcaaccgaatgttggccttcttgttccgtttctgtacaacaacnnnnnnncgtggcatacattccgtgaggtgaataa |
110 |
Q |
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| T |
44868873 |
caaaggatcacggggaatagaatcaaccgaatgttggccttcttgttccgtttctgtacaacaacaaaaaaacgtggaatacattccgtgaggtgaataa |
44868774 |
T |
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| Q |
111 |
ttgaattgtaaatgataatttaacgataataatgatgaataatggattgtacctggaaggttaaattcttcctgagaagagcgttggtttgagtccagaa |
210 |
Q |
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| T |
44868773 |
ttgaattgtaaatgataattaaacgataataatgatgaataatggattgtacctggaaggttaaattcttcctgagaagaccgttggtttgagtccagaa |
44868674 |
T |
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| Q |
211 |
gctggaagaatttaccagcttcctgagacgcgtgcatgccattctttttgtcttgcttttctcagccaacgtcgtaaacactcttacgttataatatt |
308 |
Q |
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| T |
44868673 |
gctggaagaatttaccagcttcctgagacgcgtgcatgccattctttttgtcttgcttttctcagccaacgtcgtaaacactcttacgttataatatt |
44868576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 44858150 - 44858058
Alignment:
| Q |
136 |
ataataatgatgaataatggattgt-----acctggaaggttaaattcttcctgagaagagcgttggtttgagtccagaagctggaagaattt |
223 |
Q |
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| T |
44858150 |
ataataatgatgaataatggattgtgatatacctggaaggttaaattctttctgagaagagcgtttgcttgagtacaaaagctggaagaattt |
44858058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 44845039 - 44844983
Alignment:
| Q |
157 |
ttgtacctggaaggttaaattcttcctgagaagagcgttggtttgagtccagaagct |
213 |
Q |
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| T |
44845039 |
ttgtacctggaaggttaagttctttctgagaagagcgtttgtttgagtaaagaagct |
44844983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 44893921 - 44893885
Alignment:
| Q |
159 |
gtacctggaaggttaaattcttcctgagaagagcgtt |
195 |
Q |
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| T |
44893921 |
gtacctggaaggttaaattcttcctgagaagagcgtt |
44893885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 44832936 - 44832877
Alignment:
| Q |
155 |
gattgtacctggaaggttaaattcttcctgagaagagcgttggtttgagtccagaagctg |
214 |
Q |
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| T |
44832936 |
gattatacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtacagaagctg |
44832877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 12930587 - 12930641
Alignment:
| Q |
161 |
acctggaaggttaaattcttcctgagaagagcgttggtttgagtccagaagctgg |
215 |
Q |
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| T |
12930587 |
acctggaaggttaagttctttctaagaagcgcgtttgcttgagtccagaagctgg |
12930641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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