View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5552_low_11 (Length: 292)
Name: NF5552_low_11
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_low_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 21835959 - 21835829
Alignment:
| Q |
19 |
gatacatttcatcaaattcattagcaaataaaccataggtgacctcagaaatcagattaaacagtaacaatgaggttaataaaatttgccactcaacaaa |
118 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||| ||||||| ||||||| ||| ||| |||| |||||||||||||||||||| |||||||| |||||| | |
|
|
| T |
21835959 |
gatacaattcatcacattcgttagcaaacaaagcataggtaacctcagcaattagaataaagagtaacaatgaggttaataagatttgccaatcaacata |
21835860 |
T |
|
| Q |
119 |
tccttttggaaaactacacattaatccaaca |
149 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
21835859 |
tgattttggaaaactacacattaatccaaca |
21835829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 21835743 - 21835696
Alignment:
| Q |
221 |
ctatttcttcaattccaaacctgcgaaaatttctttgaactgcaacca |
268 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
21835743 |
ctatttctttaattccaaacttgcttaaatttctttgaactgcaacca |
21835696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 392285 - 392352
Alignment:
| Q |
33 |
aattcattagcaaataaaccataggtgacctcagaaatcagattaaacagtaacaatgaggttaataa |
100 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
392285 |
aatttattagcaaataaagcaaaggtgacctcagaaatcagattgaacagtaacaatgaggttaataa |
392352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 6414336 - 6414440
Alignment:
| Q |
75 |
ttaaacagtaacaatgaggttaataaaatttgccactcaacaaatccttttggaaaactacacattaatccaacaaaacaaacttcttgcaccaacaatt |
174 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||||||| | ||| || |||||| |||| | || |||| |
|
|
| T |
6414336 |
ttaatcagtaacaattaggttaataaagttttccggtcaacaaatcattttggaaaactacacattaatacgacagaataaactttttgcgcaaaaaatt |
6414435 |
T |
|
| Q |
175 |
ataac |
179 |
Q |
| |
|
||||| |
|
|
| T |
6414436 |
ataac |
6414440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 10580499 - 10580461
Alignment:
| Q |
254 |
tttgaactgcaaccaccttcattggatctccagtaacct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580499 |
tttgaactgcaaccaccttcattggatctccagtaacct |
10580461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 392382 - 392425
Alignment:
| Q |
166 |
ccaacaattataacgaaataaaggaaattcttaggcactcagtt |
209 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
392382 |
ccaacaataataacaaaataaaggaaattcttaggcactcagtt |
392425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 392351 - 392388
Alignment:
| Q |
113 |
aacaaatccttttggaaaactacacattaatccaacaa |
150 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
392351 |
aacaaatccttttggaaaactacacatcattccaacaa |
392388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 6590612 - 6590575
Alignment:
| Q |
21 |
tacatttcatcaaattcattagcaaataaaccataggt |
58 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
6590612 |
tacatttcatcaaattcattagcaaattaaacataggt |
6590575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 37046587 - 37046524
Alignment:
| Q |
24 |
atttcatcaaattcattagcaaataaaccataggtgacctcagaaatcagattaaacagtaacaa |
88 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||| ||| | ||||| ||||||||||||| |
|
|
| T |
37046587 |
atttcatcaaattcattagcaaattaaacataggtaacc-cagcagtcagaataaacagtaacaa |
37046524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 36768862 - 36768791
Alignment:
| Q |
221 |
ctatttcttcaattccaaacctgcgaaaatttctttgaactgcaaccaccttcattggatctccagtaacct |
292 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||| || |||||||||| |||| ||| ||||||||||||| |
|
|
| T |
36768862 |
ctatttctttaattccaaacttgccgaaatttctctggactgcaaccatcttccctgggtctccagtaacct |
36768791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University