View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_low_12 (Length: 284)
Name: NF5552_low_12
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 3638167 - 3638419
Alignment:
| Q |
13 |
tgagatgaagcctagactaaagtaaaagaacctccttttcgttatctatttttgttcaccatgtgagaatatagttcttcaacgatctcctaggtgctct |
112 |
Q |
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| T |
3638167 |
tgagatgaagcctagactaaagtaaaagaacctccttttcgttatctatttttgttcaccatgtgagaatatagttcttcaacgatctcctaggtgctct |
3638266 |
T |
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| Q |
113 |
tatatgcttaaatcagacaaaagtgcccgacatcaccattactcctcctatcttcttattcatgacaaaagtatgcaaaaaggtcggttggttgtttaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3638267 |
tatatgcttaaatcagacaaaagtgcccgacatcaccattactcctcctatcttcttattcatgacaaaagtatgcaaaaaggtcggttggttgtttaaa |
3638366 |
T |
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| Q |
213 |
cttttttgagtgaagtagttgtttaaacttttaatcaataaatgtgtgaattt |
265 |
Q |
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| T |
3638367 |
cttttttgagtgaagtagttgtttaaacttttaatcaataaatgtgtgaattt |
3638419 |
T |
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