View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5552_low_13 (Length: 272)
Name: NF5552_low_13
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 3732725 - 3732974
Alignment:
| Q |
8 |
ataatacttaaatgttgaaatgattttcctttgctaattttatttagaatacgaatt-gtaattagatattattttgttgttgaaataaaacagttagat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3732725 |
ataatacttaaatgttgaaatgattttcctttgctaattttatttagaatacgaatttgtaattagatattattttgttgttgaaataaaacagttagat |
3732824 |
T |
|
| Q |
107 |
ttgaactaggtaaactcaacttgtattcatgaaagatttcttcaaaactattttgaatctacctgaactaatgttttggcgtggctaaaatagtagtgtc |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3732825 |
ttgaactaggtaagctcaacttgtattcatgaaagatttcttcaaaactattttgaatctacctgaactaatgttttggcgtggctaaaatagtagtgtc |
3732924 |
T |
|
| Q |
207 |
acaatattaacatgtaccatatattcgttttatctatgagccgatgatat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3732925 |
acaatattaacatgtaccatatattcgttttatctatgagccgatgatat |
3732974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University