View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5552_low_15 (Length: 249)
Name: NF5552_low_15
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 5281531 - 5281345
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281531 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
5281432 |
T |
|
| Q |
150 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281431 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgct |
5281345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 5289563 - 5289377
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
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|||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
5289563 |
ggcttgctattgccattgaaattccaaaagtaactaatgccgccttgattggagtttatgcattaatttctttttctagtgctgcttttgtttatgtaag |
5289464 |
T |
|
| Q |
150 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | || |||||||| || |||||||||||||| ||||| ||||| |
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| T |
5289463 |
gtcttacttgactgcacttttgggattaaaagcttctactgttttcttctcaagcttcactacagctatcttcaatgctccgatgct |
5289377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 5307818 - 5308004
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
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|||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
5307818 |
ggcttgctataaccattgaaattccaaaagtaaccaatgtcaccttgattggagtttatgcattaatttctttttctagtgctgcttttatatatgtaag |
5307917 |
T |
|
| Q |
150 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||| || |||||||||||||| ||||| ||||| |
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| T |
5307918 |
atcttacttgactgcacttttgggattaaaagcttctactgctttcttctcaagcttcactacagctatcttcaatgctccaatgct |
5308004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 15126584 - 15126770
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
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|
||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||| || ||||||||||| |||| |
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| T |
15126584 |
ggcttgctacagccattgaaattccaaaagtaactgataccaccttgattggagtttatgcattactctctatttctagtacttcttttgtatatgtaag |
15126683 |
T |
|
| Q |
150 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgct |
236 |
Q |
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|
||||||||| ||||||||||||||||||||||||| || ||| | || |||||||| || ||| |||||||||| ||||| ||||| |
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| T |
15126684 |
gtcttactttgctgcacttttgggattaaaagcttcgacggctttcttctcaagcttcactacatctatcttcaatgctccaatgct |
15126770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 14948768 - 14948582
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||| | | |||||| || |||| |
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| T |
14948768 |
ggcttgctatagccattgaaattccaaaagtaactaatgccaacttgattggagtttactcattaatttcttttgttagcgtcgtgtttgtacatataag |
14948669 |
T |
|
| Q |
150 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgct |
236 |
Q |
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| ||||||||||||||||| | |||||||||||||| ||||| | || |||||||| || |||||||||||||| ||||| ||||| |
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| T |
14948668 |
gacttacttgactgcacttcttggattaaaagcttccgctgctttcttctcaagcttcactacagctatcttcaatgctccaatgct |
14948582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 230
Target Start/End: Original strand, 5314780 - 5314960
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| ||| | |||||||||||||||||||| |||||| ||||||| |||| | ||||||||| | || |
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| T |
5314780 |
ggcttgctattgccattgaaattcaaaacgtatctagtgccaccttgattggagtttattcattaacttcttttgctagcattttgtttgtatatctgag |
5314879 |
T |
|
| Q |
150 |
gtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcc |
230 |
Q |
| |
|
||||||||||| |||| | | |||||||||||||||| ||| | || |||||||| || | |||||||||||| ||||| |
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| T |
5314880 |
gtcttacttgaatgcatatctcggattaaaagcttctaatgccttcttctcaagcttcactaaagctatcttcaatgctcc |
5314960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 31525616 - 31525506
Alignment:
| Q |
50 |
ggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaag |
149 |
Q |
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|
|||||||||||| || ||||||||||||||||| | | ||| |||||||||||||||| ||||||||||||| || ||| | ||||||||| |||| |
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| T |
31525616 |
ggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgattggagtttattcattaatttctttcactggtgttatgtttgtatatataag |
31525517 |
T |
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| Q |
150 |
gtcttacttga |
160 |
Q |
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||||||||||| |
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| T |
31525516 |
gtcttacttga |
31525506 |
T |
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