View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5552_low_16 (Length: 248)
Name: NF5552_low_16
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5552_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 10580379 - 10580224
Alignment:
| Q |
14 |
ataatggacacaaacatattccacacatcatgattttactggttctataaaactgaagtcaatatacacgagtttctggcgtatacaattaaattatgaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10580379 |
ataatggacacaaacatattccacacatcatgattttactggttctataaaactgaagtcaatatacatgagtttctggcgtatacaattaaattatgaa |
10580280 |
T |
|
| Q |
114 |
atattttttacctgtttttccataaaaatttatcagaaatcatcataagcatcaag |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10580279 |
atattttttacctgtttttccataaaaatttataagaaatcatcataagcatcaag |
10580224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 7443971 - 7443853
Alignment:
| Q |
98 |
acaattaaattatgaaatattttttacctgtttttccataaaaatttatcagaaatcatcataagcatcaagtttaggaatcaagggcttcatcatctac |
197 |
Q |
| |
|
|||| |||| |||||||||||||| || |||||||| || ||||||||| |||| || | ||||| ||||||||| |||| ||| || |||||||| |
|
|
| T |
7443971 |
acaactaaaatatgaaatatttttgacatgtttttcaattaaaatttatgagaattctttataagaatcaagtttgggaaataag---ctcttcatctac |
7443875 |
T |
|
| Q |
198 |
tcttatattttgtaacaagaag |
219 |
Q |
| |
|
|||||| || |||||||||||| |
|
|
| T |
7443874 |
tcttatcttctgtaacaagaag |
7443853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 10580220 - 10580185
Alignment:
| Q |
198 |
tcttatattttgtaacaagaagctaacgccgtaatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580220 |
tcttatattttgtaacaagaagctaacgccgtaatt |
10580185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University