View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5552_low_4 (Length: 403)

Name: NF5552_low_4
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5552_low_4
NF5552_low_4
[»] chr6 (18 HSPs)
chr6 (13-203)||(1694430-1694620)
chr6 (13-174)||(1684034-1684199)
chr6 (268-335)||(1694309-1694376)
chr6 (344-376)||(17327595-17327627)
chr6 (344-375)||(4878025-4878056)
chr6 (344-374)||(17841534-17841564)
chr6 (344-373)||(7723204-7723233)
chr6 (344-377)||(8389413-8389446)
chr6 (344-377)||(9025450-9025483)
chr6 (344-377)||(31385011-31385044)
chr6 (344-377)||(31959231-31959264)
chr6 (344-377)||(34595215-34595248)
chr6 (344-384)||(426483-426522)
chr6 (344-384)||(5732479-5732518)
chr6 (352-384)||(7801132-7801164)
chr6 (344-376)||(8365453-8365485)
chr6 (344-376)||(8805529-8805561)
chr6 (344-376)||(10339059-10339091)
[»] chr5 (17 HSPs)
chr5 (344-384)||(22423769-22423809)
chr5 (344-378)||(35017123-35017157)
chr5 (344-377)||(14873603-14873636)
chr5 (344-377)||(17123128-17123161)
chr5 (344-377)||(21191001-21191034)
chr5 (344-376)||(4105341-4105373)
chr5 (344-376)||(21576690-21576722)
chr5 (344-376)||(39268543-39268575)
chr5 (344-375)||(10298633-10298664)
chr5 (344-375)||(43001888-43001919)
chr5 (347-377)||(17088372-17088402)
chr5 (343-377)||(21194067-21194101)
chr5 (344-374)||(39698636-39698666)
chr5 (344-377)||(19820333-19820366)
chr5 (344-377)||(43564962-43564995)
chr5 (344-376)||(3966596-3966628)
chr5 (344-376)||(23015929-23015961)
[»] chr1 (20 HSPs)
chr1 (344-378)||(47989588-47989622)
chr1 (344-377)||(42359394-42359427)
chr1 (344-376)||(35702547-35702579)
chr1 (344-376)||(37598913-37598945)
chr1 (344-375)||(16297226-16297257)
chr1 (344-375)||(22947813-22947844)
chr1 (343-377)||(5898210-5898244)
chr1 (344-374)||(21365997-21366027)
chr1 (344-374)||(22515832-22515862)
chr1 (344-377)||(1486649-1486682)
chr1 (344-377)||(9828136-9828169)
chr1 (344-377)||(16812637-16812670)
chr1 (344-377)||(22881572-22881605)
chr1 (344-377)||(26830668-26830701)
chr1 (344-377)||(27965945-27965978)
chr1 (344-377)||(34741927-34741960)
chr1 (344-377)||(40917841-40917874)
chr1 (344-376)||(15765840-15765872)
chr1 (344-376)||(18556390-18556422)
chr1 (344-376)||(36878548-36878580)
[»] chr8 (10 HSPs)
chr8 (343-376)||(31109462-31109495)
chr8 (344-374)||(31514938-31514968)
chr8 (344-377)||(15816063-15816096)
chr8 (344-377)||(16987994-16988027)
chr8 (344-377)||(17751737-17751770)
chr8 (344-377)||(17760724-17760757)
chr8 (344-377)||(22652068-22652101)
chr8 (344-377)||(25566911-25566944)
chr8 (344-377)||(29510238-29510271)
chr8 (344-377)||(39820509-39820542)
[»] chr7 (16 HSPs)
chr7 (344-377)||(5409776-5409809)
chr7 (344-375)||(29763134-29763165)
chr7 (344-375)||(35862034-35862065)
chr7 (344-378)||(28973886-28973920)
chr7 (344-377)||(598289-598322)
chr7 (344-377)||(6490797-6490830)
chr7 (344-377)||(8842284-8842317)
chr7 (344-377)||(9778586-9778619)
chr7 (344-377)||(24339734-24339767)
chr7 (344-377)||(29812603-29812636)
chr7 (344-373)||(30813882-30813911)
chr7 (344-377)||(32287408-32287441)
chr7 (344-377)||(40287307-40287340)
chr7 (344-377)||(43027409-43027442)
chr7 (344-376)||(3991395-3991427)
chr7 (344-376)||(32093959-32093991)
[»] chr4 (20 HSPs)
chr4 (344-377)||(5775309-5775342)
chr4 (344-377)||(23292931-23292964)
chr4 (344-381)||(28470442-28470479)
chr4 (344-376)||(715550-715582)
chr4 (344-376)||(752876-752908)
chr4 (344-376)||(28084606-28084638)
chr4 (344-375)||(4383449-4383480)
chr4 (344-375)||(22440562-22440593)
chr4 (344-374)||(3064873-3064903)
chr4 (344-378)||(11596302-11596336)
chr4 (344-378)||(12895219-12895253)
chr4 (344-385)||(18844428-18844468)
chr4 (344-377)||(30299010-30299043)
chr4 (344-377)||(30327878-30327911)
chr4 (344-377)||(36635411-36635444)
chr4 (344-377)||(40784034-40784067)
chr4 (344-377)||(53381535-53381568)
chr4 (344-376)||(28964193-28964225)
chr4 (344-376)||(29205550-29205582)
chr4 (345-377)||(30094094-30094126)
[»] chr3 (14 HSPs)
chr3 (344-377)||(20503546-20503579)
chr3 (344-377)||(34185057-34185090)
chr3 (344-375)||(4990917-4990948)
chr3 (344-374)||(8789493-8789523)
chr3 (344-374)||(8842413-8842443)
chr3 (344-378)||(11610589-11610623)
chr3 (344-374)||(55401159-55401189)
chr3 (348-377)||(4987229-4987258)
chr3 (344-377)||(14979230-14979263)
chr3 (344-377)||(27505332-27505365)
chr3 (344-377)||(34910398-34910431)
chr3 (344-377)||(40052393-40052426)
chr3 (344-377)||(40993280-40993313)
chr3 (344-376)||(41961584-41961616)
[»] chr2 (18 HSPs)
chr2 (344-377)||(2438664-2438697)
chr2 (344-377)||(37419835-37419868)
chr2 (344-376)||(26769604-26769636)
chr2 (344-378)||(17776678-17776712)
chr2 (347-377)||(23354589-23354619)
chr2 (344-377)||(11223798-11223831)
chr2 (344-377)||(18840958-18840991)
chr2 (344-377)||(19942346-19942379)
chr2 (344-377)||(23058389-23058422)
chr2 (344-377)||(23354929-23354962)
chr2 (344-377)||(34221468-34221501)
chr2 (347-384)||(34691777-34691813)
chr2 (347-384)||(34714189-34714225)
chr2 (344-377)||(38117104-38117137)
chr2 (344-376)||(3444831-3444863)
chr2 (344-384)||(18255949-18255988)
chr2 (344-384)||(19536366-19536405)
chr2 (344-376)||(42511327-42511359)
[»] scaffold0793 (1 HSPs)
scaffold0793 (344-376)||(4826-4858)
[»] scaffold0475 (1 HSPs)
scaffold0475 (344-376)||(3390-3422)
[»] scaffold0004 (1 HSPs)
scaffold0004 (344-375)||(92905-92936)
[»] scaffold0027 (1 HSPs)
scaffold0027 (344-374)||(46741-46771)
[»] scaffold0652 (1 HSPs)
scaffold0652 (344-377)||(407-440)
[»] scaffold0009 (1 HSPs)
scaffold0009 (346-375)||(188483-188512)
[»] scaffold0003 (1 HSPs)
scaffold0003 (344-377)||(241686-241719)
[»] scaffold0086 (1 HSPs)
scaffold0086 (345-373)||(3024-3052)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 1694620 - 1694430
Alignment:
Q  13 atactatatggctattactggtgcaggggagataatcagattggtgatgataagaatgatgttccagctgtgactgtagtctgatctgattatggcactt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1694620 atactatatggctattactggtgcaggggagataatcagattggtgatgataagaatgatgctccagctgtgactgtagtctgatctgattatggcactt 1694521  T
Q  113 cnnnnnnnnnnnnncaaattagcatgatattacaaattttattagaggttttatctaggtgannnnnnnacaaatcaggatgacattacaa 203  Q
    |             ||||||||||||| |||||||||||||||||||| |||||||||||||       |||||| |||||||||||||||    
T  1694520 cttttttcttttttcaaattagcatgacattacaaattttattagaggatttatctaggtgatttttttacaaattaggatgacattacaa 1694430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 1684199 - 1684034
Alignment:
Q  13 atactatatggctattactggtgcaggggagataatcagattggtgatgataagaatgat---gttccagctgtgactgtagtctgatctgattatggca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |   | ||||| |||||||| ||||||||||||||||||||    
T  1684199 atactatatggctattactggtgcaggggagataatcagattgatgatgataagggtggtccagctccagttgtgactgcagtctgatctgattatggca 1684100  T
Q  110 cttc-nnnnnnnnnnnnncaaattagcatgatattacaaattttattagaggttttatctaggtga 174  Q
    ||||              |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  1684099 cttctttttttcaattttcaaattaggatgacattacaaattttattagaggttttatctaggtga 1684034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 1694376 - 1694309
Alignment:
Q  268 tactctcatattccaaggttttattgagaagaattggctattttttacctttcacaacctccatcatg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1694376 tactctcatattccaaggttttattgagaagaattggctattttttacctttcacaacctctatcatg 1694309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 17327595 - 17327627
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  17327595 aagcacggacactcctcggattaggcgtgtccc 17327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 4878056 - 4878025
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  4878056 aagcacggacactcctcggattaggcgtgtcc 4878025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 17841534 - 17841564
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  17841534 aagcacggacactcctcggattaggcgtgtc 17841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 7723204 - 7723233
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgt 373  Q
    ||||||||||||||||||||||||||||||    
T  7723204 aagcacggacactcctcggattaggcgtgt 7723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 8389413 - 8389446
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  8389413 aagcacggacactcctcggattaggtgtgtcccg 8389446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 9025450 - 9025483
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  9025450 aagcacggacacttctcggattaggcgtgtcccg 9025483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 31385044 - 31385011
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||| |||||||||||||||||    
T  31385044 aagcacggacactccttggattaggcgtgtcccg 31385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 31959264 - 31959231
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  31959264 aagcacggacactcctcggattaggtgtgtcccg 31959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 34595248 - 34595215
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  34595248 aagcacggacactcctcggattaggtgtgtcccg 34595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 426483 - 426522
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  426483 aagcacggacactcctcagattaggcgtgt-ccgacaccga 426522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 5732479 - 5732518
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  5732479 aagcatggacactcctcggattaggcgtgt-ccgacaccga 5732518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 7801132 - 7801164
Alignment:
Q  352 acactcctcggattaggcgtgtcccgacaccga 384  Q
    |||||| ||||||||||||||||||||||||||    
T  7801132 acactcttcggattaggcgtgtcccgacaccga 7801164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 8365453 - 8365485
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||||| |||||||||||||||||||||||    
T  8365453 aagcacggagactcctcggattaggcgtgtccc 8365485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 8805529 - 8805561
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||| ||||||    
T  8805529 aagcacggacactcctcggattaggcatgtccc 8805561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 10339059 - 10339091
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||||||||||||| |||||||||||||||    
T  10339059 aagcacggacactcctccgattaggcgtgtccc 10339091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 22423769 - 22423809
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  22423769 aagcacggacactcctcggattaggcgtgtccagacaccga 22423809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 35017157 - 35017123
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    |||||||||||||||||||||||||||||||||||    
T  35017157 aagcacggacactcctcggattaggcgtgtcccga 35017123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 14873636 - 14873603
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  14873636 aagcacggacactcctcggattaggcgtgtcccg 14873603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 17123161 - 17123128
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  17123161 aagcacggacactcctcggattaggcgtgtcccg 17123128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 21191001 - 21191034
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  21191001 aagcacggacactcctcggattaggcgtgtcccg 21191034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 4105373 - 4105341
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  4105373 aagcacggacactcctcggattaggcgtgtccc 4105341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 21576690 - 21576722
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  21576690 aagcacggacactcctcggattaggcgtgtccc 21576722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 39268543 - 39268575
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  39268543 aagcacggacactcctcggattaggcgtgtccc 39268575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 10298664 - 10298633
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  10298664 aagcacggacactcctcggattaggcgtgtcc 10298633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 43001919 - 43001888
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  43001919 aagcacggacactcctcggattaggcgtgtcc 43001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 377
Target Start/End: Complemental strand, 17088402 - 17088372
Alignment:
Q  347 cacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccg 17088372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 21194067 - 21194101
Alignment:
Q  343 aaagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||||||||| ||||    
T  21194067 aaagcacggacactcctcggattaggcgtgccccg 21194101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 39698666 - 39698636
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  39698666 aagcacggacactcctcggattaggcgtgtc 39698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 19820333 - 19820366
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||| ||||||||||||||||    
T  19820333 aagcacggacactcctctgattaggcgtgtcccg 19820366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 43564995 - 43564962
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  43564995 aagcacggacacttctcggattaggcgtgtcccg 43564962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 3966628 - 3966596
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||| ||||||||    
T  3966628 aagcacggacactcctcggattagacgtgtccc 3966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 23015929 - 23015961
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||| ||||||||||||||||||||||||||||    
T  23015929 aagctcggacactcctcggattaggcgtgtccc 23015961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 47989622 - 47989588
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    |||||||||||||||||||||||||||||||||||    
T  47989622 aagcacggacactcctcggattaggcgtgtcccga 47989588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 42359394 - 42359427
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  42359394 aagcacggacactcctcggattaggcgtgtcccg 42359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 35702547 - 35702579
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  35702547 aagcacggacactcctcggattaggcgtgtccc 35702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 37598945 - 37598913
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  37598945 aagcacggacactcctcggattaggcgtgtccc 37598913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 16297226 - 16297257
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  16297226 aagcacggacactcctcggattaggcgtgtcc 16297257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 22947844 - 22947813
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  22947844 aagcacggacactcctcggattaggcgtgtcc 22947813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 5898210 - 5898244
Alignment:
Q  343 aaagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| |||||||||    
T  5898210 aaagcacggacactcctcggattagacgtgtcccg 5898244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 21365997 - 21366027
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  21365997 aagcacggacactcctcggattaggcgtgtc 21366027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 22515832 - 22515862
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  22515832 aagcacggacactcctcggattaggcgtgtc 22515862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 1486649 - 1486682
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||| |||||||||||||||||||||||||||    
T  1486649 aagcacagacactcctcggattaggcgtgtcccg 1486682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 9828169 - 9828136
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||| |||||||||    
T  9828169 aagcacggacactcctcggattagacgtgtcccg 9828136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 16812670 - 16812637
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||| ||||||||||||||||    
T  16812670 aagcacggacactcctcagattaggcgtgtcccg 16812637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 22881572 - 22881605
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||| |||||||||    
T  22881572 aagcacggacactcctcggattagacgtgtcccg 22881605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 26830701 - 26830668
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||| ||||||||||||||||    
T  26830701 aagcacggacactcctctgattaggcgtgtcccg 26830668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 27965945 - 27965978
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||| ||||||||||||||||||||||||||||    
T  27965945 aagcatggacactcctcggattaggcgtgtcccg 27965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 34741960 - 34741927
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||| |||||||||||||||||||    
T  34741960 aagcacggacactcttcggattaggcgtgtcccg 34741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 40917874 - 40917841
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||| ||||||||||||||||||||||    
T  40917874 aagcacggacagtcctcggattaggcgtgtcccg 40917841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 15765872 - 15765840
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||| ||||||||||||||||||    
T  15765872 aagcacggacactcttcggattaggcgtgtccc 15765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 18556390 - 18556422
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||||||||| |||||||||||||||||||    
T  18556390 aagcacggacacttctcggattaggcgtgtccc 18556422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 36878580 - 36878548
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||| ||||||||||||||||    
T  36878580 aagcacggacactcctgggattaggcgtgtccc 36878548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 31109462 - 31109495
Alignment:
Q  343 aaagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||||||||||||||||||||||||||||||    
T  31109462 aaagcacggacactcctcggattaggcgtgtccc 31109495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 31514968 - 31514938
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  31514968 aagcacggacactcctcggattaggcgtgtc 31514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 15816063 - 15816096
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  15816063 aagcacggacacttctcggattaggcgtgtcccg 15816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 16988027 - 16987994
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  16988027 aagcacggacactcctcggattaggggtgtcccg 16987994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 17751770 - 17751737
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||| |||||||||||||||||||||||||||||    
T  17751770 aagcgcggacactcctcggattaggcgtgtcccg 17751737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 17760757 - 17760724
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||| |||||||||||||||||||||||||||||    
T  17760757 aagcgcggacactcctcggattaggcgtgtcccg 17760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 22652101 - 22652068
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||| |||||||||    
T  22652101 aagcacggacactcctcggattagacgtgtcccg 22652068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 25566944 - 25566911
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||| |||||||||||||||||||||||||||    
T  25566944 aagcacagacactcctcggattaggcgtgtcccg 25566911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 29510238 - 29510271
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  29510238 aagcacggacactcctcggattaggtgtgtcccg 29510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 39820542 - 39820509
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  39820542 aagcacggacacttctcggattaggcgtgtcccg 39820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 5409776 - 5409809
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  5409776 aagcacggacactcctcggattaggcgtgtcccg 5409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 29763134 - 29763165
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  29763134 aagcacggacactcctcggattaggcgtgtcc 29763165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 35862065 - 35862034
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  35862065 aagcacggacactcctcggattaggcgtgtcc 35862034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 28973886 - 28973920
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    |||||||||||| ||||||||||||||||||||||    
T  28973886 aagcacggacacacctcggattaggcgtgtcccga 28973920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 598322 - 598289
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccg 598289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 6490830 - 6490797
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||| ||||||||||    
T  6490830 aagcacggacactcctcggattaagcgtgtcccg 6490797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 8842284 - 8842317
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||| |||||||||||||||||    
T  8842284 aagcacggacactccttggattaggcgtgtcccg 8842317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 9778619 - 9778586
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||| |||||||||||||||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccg 9778586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 24339767 - 24339734
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||| |||||||||||||||||||||||||    
T  24339767 aagcacgggcactcctcggattaggcgtgtcccg 24339734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 29812603 - 29812636
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  29812603 aagcacggacacttctcggattaggcgtgtcccg 29812636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 30813911 - 30813882
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgt 373  Q
    ||||||||||||||||||||||||||||||    
T  30813911 aagcacggacactcctcggattaggcgtgt 30813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 32287408 - 32287441
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  32287408 aagcacggacactcctcggattaggtgtgtcccg 32287441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 40287307 - 40287340
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||||| |||||||    
T  40287307 aagcacggacactcctcggattaggcatgtcccg 40287340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 43027409 - 43027442
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||| |||||||||||||||||||    
T  43027409 aagcacggacactcatcggattaggcgtgtcccg 43027442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 3991427 - 3991395
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||| ||||||||||||||||||||||||||||    
T  3991427 aagcccggacactcctcggattaggcgtgtccc 3991395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 32093959 - 32093991
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||| |||||||||||||||||||||||||    
T  32093959 aagcacgaacactcctcggattaggcgtgtccc 32093991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 5775309 - 5775342
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  5775309 aagcacggacactcctcggattaggcgtgtcccg 5775342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 23292931 - 23292964
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  23292931 aagcacggacactcctcggattaggcgtgtcccg 23292964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 28470479 - 28470442
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacac 381  Q
    |||||||||||||||||||||||||| |||||||||||    
T  28470479 aagcacggacactcctcggattaggcatgtcccgacac 28470442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 715550 - 715582
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  715550 aagcacggacactcctcggattaggcgtgtccc 715582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 752876 - 752908
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  752876 aagcacggacactcctcggattaggcgtgtccc 752908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 28084638 - 28084606
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  28084638 aagcacggacactcctcggattaggcgtgtccc 28084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 4383480 - 4383449
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  4383480 aagcacggacactcctcggattaggcgtgtcc 4383449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 22440562 - 22440593
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  22440562 aagcacggacactcctcggattaggcgtgtcc 22440593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 3064873 - 3064903
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  3064873 aagcacggacactcctcggattaggcgtgtc 3064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 11596302 - 11596336
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    ||||||||||||||||| |||||||||||||||||    
T  11596302 aagcacggacactcctcagattaggcgtgtcccga 11596336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 12895219 - 12895253
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    ||||||| |||||||||||||||||||||||||||    
T  12895219 aagcacgaacactcctcggattaggcgtgtcccga 12895253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 18844428 - 18844468
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacaccgat 385  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  18844428 aagcacggacacttctcggattaggcgtgt-ccgacaccgat 18844468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 30299043 - 30299010
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||| |||||||||    
T  30299043 aagcacggacactcctcggattagacgtgtcccg 30299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 30327911 - 30327878
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||| |||||||||    
T  30327911 aagcacggacactcctcggattagacgtgtcccg 30327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 36635444 - 36635411
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||| |||||||||||||||||||    
T  36635444 aagcacggacactcttcggattaggcgtgtcccg 36635411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 40784067 - 40784034
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  40784067 aagcacggacactcctcggattaggtgtgtcccg 40784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 53381535 - 53381568
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  53381535 aagcacggacactcctcggattaggtgtgtcccg 53381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 28964193 - 28964225
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||| |||||||||||||||||||||||||||    
T  28964193 aagcatggacactcctcggattaggcgtgtccc 28964225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 29205582 - 29205550
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||| |||||||||||||||||||||||||    
T  29205582 aagcacgaacactcctcggattaggcgtgtccc 29205550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 30094126 - 30094094
Alignment:
Q  345 agcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| |||||||||||||||||||    
T  30094126 agcacggacactcttcggattaggcgtgtcccg 30094094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 20503579 - 20503546
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  20503579 aagcacggacactcctcggattaggcgtgtcccg 20503546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 34185057 - 34185090
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  34185057 aagcacggacactcctcggattaggcgtgtcccg 34185090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 4990917 - 4990948
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  4990917 aagcacggacactcctcggattaggcgtgtcc 4990948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 8789493 - 8789523
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  8789493 aagcacggacactcctcggattaggcgtgtc 8789523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 8842443 - 8842413
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  8842443 aagcacggacactcctcggattaggcgtgtc 8842413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 11610623 - 11610589
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    ||||||||||||||||| |||||||||||||||||    
T  11610623 aagcacggacactcctcagattaggcgtgtcccga 11610589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 55401189 - 55401159
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  55401189 aagcacggacactcctcggattaggcgtgtc 55401159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 4987229 - 4987258
Alignment:
Q  348 acggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||    
T  4987229 acggacactcctcggattaggcgtgtcccg 4987258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 14979263 - 14979230
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||| ||||||||||||||    
T  14979263 aagcacggacactcctcgggttaggcgtgtcccg 14979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 27505365 - 27505332
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||||| |||||||    
T  27505365 aagcacggacactcctcggattaggcatgtcccg 27505332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 34910431 - 34910398
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||| |||||||||    
T  34910431 aagcacggacactcctcggattagacgtgtcccg 34910398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 40052426 - 40052393
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||| ||||||||||||||||||||||||||    
T  40052426 aagcacgaacactcctcggattaggcgtgtcccg 40052393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 40993280 - 40993313
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||| ||||||||||||||||||||||||||||    
T  40993280 aagcatggacactcctcggattaggcgtgtcccg 40993313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 41961584 - 41961616
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    ||||||||||||| |||||||||||||||||||    
T  41961584 aagcacggacacttctcggattaggcgtgtccc 41961616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 2438664 - 2438697
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccg 2438697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 37419868 - 37419835
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  37419868 aagcacggacactcctcggattaggcgtgtcccg 37419835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 26769636 - 26769604
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  26769636 aagcacggacactcctcggattaggcgtgtccc 26769604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 17776712 - 17776678
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccga 378  Q
    |||||||||||||||||||||||||| ||||||||    
T  17776712 aagcacggacactcctcggattaggcctgtcccga 17776678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 377
Target Start/End: Original strand, 23354589 - 23354619
Alignment:
Q  347 cacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||||||||||||||||||||||    
T  23354589 cacggacactcctcggattaggcgtgtcccg 23354619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 11223798 - 11223831
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||| ||||||||||||||||    
T  11223798 aagcacggacactcctcagattaggcgtgtcccg 11223831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 18840958 - 18840991
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  18840958 aagcacggacactcctcggattaggtgtgtcccg 18840991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 19942379 - 19942346
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||| ||||||||||||||||||||||||||||    
T  19942379 aagcatggacactcctcggattaggcgtgtcccg 19942346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 23058389 - 23058422
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  23058389 aagcacggacacttctcggattaggcgtgtcccg 23058422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 23354929 - 23354962
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||| ||||||||||||||||||||||||||||    
T  23354929 aagcaaggacactcctcggattaggcgtgtcccg 23354962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 34221468 - 34221501
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||| ||||||||||||||||||||||||    
T  34221468 aagcacggaaactcctcggattaggcgtgtcccg 34221501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 34691777 - 34691813
Alignment:
Q  347 cacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34691777 cacggacactcctcggattaggcgtgt-ccgacaccga 34691813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 34714189 - 34714225
Alignment:
Q  347 cacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34714189 cacggacactcctcggattaggcgtgt-ccgacaccga 34714225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 38117104 - 38117137
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    |||||||||||| |||||||||||||||||||||    
T  38117104 aagcacggacacccctcggattaggcgtgtcccg 38117137  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 3444831 - 3444863
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||| ||||||    
T  3444831 aagcacggacactcctcggattaggcatgtccc 3444863  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 18255949 - 18255988
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  18255949 aagcacggacactccttggattaggcgtgt-ccgacaccga 18255988  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 19536366 - 19536405
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccgacaccga 384  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  19536366 aagcatggacactcctcggattaggcgtgt-ccgacaccga 19536405  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 42511327 - 42511359
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||| ||||||||    
T  42511327 aagcacggacactcctcggattagccgtgtccc 42511359  T

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Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 4826 - 4858
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  4826 aagcacggacactcctcggattaggcgtgtccc 4858  T

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Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 3422 - 3390
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtccc 376  Q
    |||||||||||||||||||||||||||||||||    
T  3422 aagcacggacactcctcggattaggcgtgtccc 3390  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 92936 - 92905
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||||    
T  92936 aagcacggacactcctcggattaggcgtgtcc 92905  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 46771 - 46741
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtc 374  Q
    |||||||||||||||||||||||||||||||    
T  46771 aagcacggacactcctcggattaggcgtgtc 46741  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 407 - 440
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||||||||||||||| ||||||||    
T  407 aagcacggacactcctcggattaggtgtgtcccg 440  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 375
Target Start/End: Complemental strand, 188512 - 188483
Alignment:
Q  346 gcacggacactcctcggattaggcgtgtcc 375  Q
    ||||||||||||||||||||||||||||||    
T  188512 gcacggacactcctcggattaggcgtgtcc 188483  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 241719 - 241686
Alignment:
Q  344 aagcacggacactcctcggattaggcgtgtcccg 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  241719 aagcacggacacttctcggattaggcgtgtcccg 241686  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 3052 - 3024
Alignment:
Q  345 agcacggacactcctcggattaggcgtgt 373  Q
    |||||||||||||||||||||||||||||    
T  3052 agcacggacactcctcggattaggcgtgt 3024  T

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