View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5552_low_8 (Length: 330)

Name: NF5552_low_8
Description: NF5552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5552_low_8
NF5552_low_8
[»] chr1 (1 HSPs)
chr1 (1-330)||(31478982-31479315)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 31479315 - 31478982
Alignment:
Q  1 tctccttctttggggtcctttgctctatgataaattaactaattgccaatgtgaagtgtgaactacttatttggcatcatttgcggactatgctttattg 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||     
T  31479315 tctccttctttggggtcctttgctgtatgataaatcaactaattgccaatgcgaa-------ctacttatttggcatcatttgcggactatgctttattt 31479223  T
Q  101 tttttaccatgtacat----------tatgtaaattttagatactctaaattttagttggataccatgggtaccacatataaaannnnnnnnnnnnnnnn 190  Q
    ||||||||||| ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  31479222 tttttaccatggacataatcaagatttatgtaaattttagatactctaaattttagttggataccatgggtaccacatataaaattttatttttattttt 31479123  T
Q  191 -aaatgagtttatatgaaaatatgtcatatcgttgaataaatcgatgatcggtacattctcaactaacttcatagatatcactatcttcgtcaaagattt 289  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31479122 taaatgagtttatatgaaaatatgtcatatcgttgaataaatcgatgattggtacattctcaacaaacttcatagatatcactatcttcgtcaaagattt 31479023  T
Q  290 atcaaggtgaacttagttttgatactttttacattattgta 330  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31479022 atcaaggtgaacttagttttgatactttttacattattgta 31478982  T

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