View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553-Insertion-1 (Length: 1040)

Name: NF5553-Insertion-1
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553-Insertion-1
NF5553-Insertion-1
[»] chr4 (2 HSPs)
chr4 (8-836)||(55339586-55340436)
chr4 (837-893)||(55339512-55339569)


Alignment Details
Target: chr4 (Bit Score: 689; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 8 - 836
Target Start/End: Complemental strand, 55340436 - 55339586
Alignment:
Q  8 ggaacattgaaaagcaacaagaataaattctcccaagttaaaacacccctaaccactctttctaggtactttgtggaatcttaacttgtgaagcagaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55340436 ggaacattgaaaagcaacaagaataaattctcccaagataaa-cacccctaaccactctttctaggtactttgtggaatcttaacttgtgaagcagaaaa 55340338  T
Q  108 aggaaaagttgcctacttatcgatgcactaagaacaaacataaattgacactaaatttttacctctatttgacagaccaaattaattgaaactgaactca 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55340337 aggaaaagttgcctacttatctatgcactaagaacaaacataaattgacactaaatttttacctctatttgacagaccaaattaattgaaactgaactca 55340238  T
Q  208 aaaacgctgagtgctatgagcaagctgcttgcatttcctgcgtttgttgctttgttatcatgacatatctacgaaagtactagttattggcgacaggttc 307  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  55340237 aaaacgccgagtgctatgagcaagctgcttgcatttcctgcgtttgttgctttgttatcatgacatatctacgaaagtactagttattggcgacagtttc 55340138  T
Q  308 tataaaagtgctcatttgacgtctaatatttacactttcctatagtacatactatttcggactgggtcaaggcacaatctatttaggaatcatggcctaa 407  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55340137 tataaaagtgctcatgtgacgtctaatatttacactttgctatagtacatactatttcggactgggtcaaggcacaatctatttaggaatcatggcctaa 55340038  T
Q  408 tcaaaggagctacaccatgtttagaaggaggatcatacgcaacaa-gaaaagaaactaacaaacactaagggccaaagtaatatcaaatttcttaaggcc 506  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  55340037 tcaaaggagctacaccatgtttagaaggaggatcatacacaacaatgaaaagaaactaacaaacaccaagggccaaagtaatatcaaatttcttaaggcc 55339938  T
Q  507 taagaaacaaactaac----------------------aataaaaacagatattcagcaaaccaacaatgtcatatccatttttggttttcctcatacaa 584  Q
    ||||||||||||||||                      || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55339937 taagaaacaaactaacaaacaactgggggaactccaacaacaaaaacagatattcagcaaaccaacaatgtcatatccatttttggttttcctcgtacaa 55339838  T
Q  585 caacttgtcgtagtgttacgaagtgttgattgatgctgctgcttttttctttgttctgacttctgaaatgacttataaaaattgtctaggccattaaaaa 684  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  55339837 caactagtcgtagtgttacgaagtgttgattgatgctgctgcttttttctttgttctgacttctgaaatgactcctaaaaattgtctaggccattaaaaa 55339738  T
Q  685 tgttcccagttatgttaaaggtgatgcgacattgataccatttcatgcggaaccttcaaaataagttttatacatcataaactgaataggctacatcaaa 784  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||    
T  55339737 tgttcacagttatgttaaaggtgatgcgacattgataccatttcatacggaaccttcaacacaagttttataaatcataaactgaataggctacatcaaa 55339638  T
Q  785 caactactgataatactaataatcagaaaaaagatgatgggaatgtgggggg 836  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55339637 caactactgataatactaataatcagaaaaaagatgatgggactgtgggggg 55339586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 837 - 893
Target Start/End: Complemental strand, 55339569 - 55339512
Alignment:
Q  837 taacgaacaaaggttgaagaaga-tattccattcattgtgtgag-aaaataatctaagt 893  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  55339569 taacgaacaaaggttgaagaagaatattc-attcattgtgtgagaaaaataatctaagt 55339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University