View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553-Insertion-2 (Length: 1006)
Name: NF5553-Insertion-2
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553-Insertion-2 |
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| [»] scaffold0329 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 926; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 926; E-Value: 0
Query Start/End: Original strand, 8 - 960
Target Start/End: Complemental strand, 3862184 - 3861231
Alignment:
| Q |
8 |
cttaccaaattcctattagaaagcacgttgaatattgattcggcatcgttcacctgcccacattttgagtacatgtcgatcagggaactccctacaacga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862184 |
cttaccaaattcctattagaaagcacgttgaatattgattcggcatcgttcacctgcccacattttgagtacatgtcgatcagggaactccctacaacga |
3862085 |
T |
|
| Q |
108 |
tcgatgaatctaaaccatactttattgtacaacaatgaatcagcatcccccatgttaacgctgacagactggcaattccgtttagaattattgaaaatgt |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3862084 |
tcgacgaatctaaaccatactttattgtacaacaatgaatcagcatcccccatgttaacgctgacagactagcaattccgtttagaattattgaaaatgt |
3861985 |
T |
|
| Q |
208 |
gaactcgtctatctgcaagtttctcaaatgcattttcccgaacatttccaaagcttcgggaactcgactcctattaacaaatccagtaattacggagttc |
307 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861984 |
gaactcgtctatctgcaagtttttcaaatgcattttcccgaacatttccaaagcttcgggaactcgactcctattaacaaatccagtaattacggagttc |
3861885 |
T |
|
| Q |
308 |
caagatgatgaatttggacacggcatagttgacaaaatccgaacagcgtcttctatcttcccagcttgagcaataccatttatcagcccattataagaaa |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861884 |
caagatgatgaatttggacacggcatagttgacaaaatccgaacagcgtcttctatcttcccagcttgagcaataccatttatcagcccattataagaaa |
3861785 |
T |
|
| Q |
408 |
caacatcagggttaggcatgagttgcaaaaacttgaaaccaagtccaatgtttccattgtttgcacatgcggctataactgaattccaagaaataacatc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861784 |
caacatcagggttaggcatgagttgcaaaaacttgaaaccaagtccaatgtttccattgtttgcacatgcggctataactgaattccaagaaataacatc |
3861685 |
T |
|
| Q |
508 |
cttgtcagctatatcagagaatatccgaacagcacgttcaacagatccgcatttgccatacatatcaatcaagcagttagcaacaacagtattattatcc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861684 |
cttgtcagctatatcagagaatatccgaacagcacgttcaacagatccgcatttgccatacatatcaatcaagcagttagcaacaacagtattattatcc |
3861585 |
T |
|
| Q |
608 |
attcctaatttcactgtcttggaatgaattgaactaccaagtttcaacagactcagttgggcacaagcaaccatagcagacgtgaaagagaacgcgtcgg |
707 |
Q |
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| T |
3861584 |
attcctaatttcactgtcttggaatgaattgaactaccaagtttcaacagactcagttgggcacaagcaaccatagcagacgtgaaagagaacgcgtcgg |
3861485 |
T |
|
| Q |
708 |
cacaaatttgagatctttctagctttgtaaaaagagacaatgcttttttaaactggccagcatggacataaccagaaatcaaagtgttccaagaaacgac |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861484 |
cacaaatttgagatctttctagctttgtaaaaagagacaatgcttttttaaactggccagcatggacataaccagaaatcaaagtgttccaagaaacgac |
3861385 |
T |
|
| Q |
808 |
atttggttgaggaatttcaacaaacagattgtgggcatgagtgaaaaggtgcattttgacatagaatttgatgggggtagtggagacataaatatttgca |
907 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3861384 |
atttggttgaggaatttcaacaaacagattgtgggcatgagtgaaaaggtgcattttgacatagaatttgatgagggtagtggagacataaatatttgca |
3861285 |
T |
|
| Q |
908 |
tg-aaatagccagaacgtattgcataactgtggatttgttgtccgaatttgtgg |
960 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3861284 |
tgaaaataaccagaacgtattgcataactgtggatttgttgtccgaatttgtgg |
3861231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 809 - 866
Target Start/End: Original strand, 19287987 - 19288044
Alignment:
| Q |
809 |
tttggttgaggaatttcaacaaacagattgtgggcatgagtgaaaaggtgcattttga |
866 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
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| T |
19287987 |
tttggttgaggaatttcaacaaacagtttgtgggcatgagtgaaaaagtgtattttga |
19288044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 809 - 866
Target Start/End: Complemental strand, 16263 - 16206
Alignment:
| Q |
809 |
tttggttgaggaatttcaacaaacagattgtgggcatgagtgaaaaggtgcattttga |
866 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||| ||| ||| ||||||| |
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| T |
16263 |
tttggttgaggaatttcaataaacatattgtgggcatgagtgcaaaagtgtattttga |
16206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 809 - 870
Target Start/End: Complemental strand, 35149376 - 35149315
Alignment:
| Q |
809 |
tttggttgaggaatttcaacaaacagattgtgggcatgagtgaaaaggtgcattttgacata |
870 |
Q |
| |
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||||||||| || ||||||||| || ||||||||||| ||||||| ||||||||||||||| |
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| T |
35149376 |
tttggttgaagagtttcaacaagcatattgtgggcatcagtgaaacagtgcattttgacata |
35149315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 809 - 869
Target Start/End: Original strand, 38101 - 38161
Alignment:
| Q |
809 |
tttggttgaggaatttcaacaaacagattgtgggcatgagtgaaaaggtgcattttgacat |
869 |
Q |
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||||||||||||||||||||||||| ||||| || ||| ||||||| || |||||||||| |
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| T |
38101 |
tttggttgaggaatttcaacaaacatattgtaggtatgggtgaaaaaatgtattttgacat |
38161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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