View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5553-Insertion-4 (Length: 927)
Name: NF5553-Insertion-4
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553-Insertion-4 |
 | |
|
| [»] scaffold0831 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 37 - 530
Target Start/End: Complemental strand, 44185751 - 44185269
Alignment:
| Q |
37 |
attccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaaca---tatcaatataaatatcatcctgttga |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44185751 |
attccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaacaacatatcaatataaatatcatcctgttga |
44185652 |
T |
|
| Q |
134 |
aatgaaactggccatttcaaataaattcctcagcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagag |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44185651 |
aatgaaactggccatttcaaataaattcctcagcagagagcaaatacagattggaaccgtctcgaggatgtggcgatatctccttaatatttaggaagag |
44185552 |
T |
|
| Q |
234 |
ataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaataaaagagaccatgatttggagcacaagtaaatcga |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44185551 |
ataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgtggaacaattgcatgaaataaaagagaccatgatttggagcac----------- |
44185463 |
T |
|
| Q |
334 |
ttgagagatttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44185462 |
-------atttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatt |
44185370 |
T |
|
| Q |
434 |
tctttctggaacgtgaagcgatttctttgtgactgt----gcaatgcaaaccaaacggaacggtgggagcttttaacttcctttaaaatactccacacta |
529 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44185369 |
tctttctcgaacgtgaagcgatttctttgtgactgtgtgcgcaatgcaaaccaaacggaacggtgggagcttttaacttcctttaaaatactccacacta |
44185270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 70 - 479
Target Start/End: Complemental strand, 4876300 - 4875859
Alignment:
| Q |
70 |
agagaaacaaagcaagtcattaataccagaatccaacatatcaatataaat---atcatcctgttgaaatgaaactggccatttcaaat----------- |
155 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |
|
|
| T |
4876300 |
agagaaacaaagcacgtcgttaataccggaatccaacatatcaatataaatctcatcatcatgttgaaatgaaactggccatttcaatttaaccatattc |
4876201 |
T |
|
| Q |
156 |
--aaattcctcagcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
4876200 |
tcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatg |
4876101 |
T |
|
| Q |
254 |
agcgatgcatagatatgaaattggtgcggaacaattgcatgaaat--------------aaaagagaccatgatttggag-cacaagtaaatcgattgag |
338 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| |||| ||||||| |||||| |
|
|
| T |
4876100 |
atcgatgcatagatatgaaattggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatcaattgag |
4876001 |
T |
|
| Q |
339 |
agatttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatttcttt |
438 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876000 |
agattggaggggtaatttggaaagaatagaaaaggaaatgtcatcgggaatatagctacggttactaaccttgtcactttttgtagccatggatttcttt |
4875901 |
T |
|
| Q |
439 |
ctggaacgtgaagcgatttctttgtg-actgtgcaatgcaaa |
479 |
Q |
| |
|
|| ||||||||||| |||||| |||| |||||||||| |||| |
|
|
| T |
4875900 |
ctcgaacgtgaagccatttctctgtgaactgtgcaatacaaa |
4875859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 591 - 916
Target Start/End: Complemental strand, 44185207 - 44184901
Alignment:
| Q |
591 |
tctcctttcgataaaacttagacttctgataagttaatcgaataattgataaagttaatggggttttaccttctgccatttaggtgaattttaacatacc |
690 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||| |
|
|
| T |
44185207 |
tctcctttcgataaaacttagacttttgataagttaatcgaataattgataaagttaatagggttttacctcctgccattt----------tatcataca |
44185118 |
T |
|
| Q |
691 |
cctataannnnnnnnagattctcccttaaaattaaaagattctttgatttgttaaaatctcataatatagagaacagtacagaacaataaaagttgtgcg |
790 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
44185117 |
actgtaattttttttagatttccccttaaaattaaaagattctttgatttgttaaaat--------ataga-aacagtacagaacaataaaagttgtgcg |
44185027 |
T |
|
| Q |
791 |
gtgtttgatccaaaagataacaatggaatagaacaaaaacagtagcggagcactggacaagtctcccgaaatttgtaacccgcttaattggaggataagt |
890 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
44185026 |
gtgtttgatccaaaagataacaatggaatagaacaaaaacaatagcggagcactggacaagtctactgaaatttgtaacccgcttaattggaggacaagt |
44184927 |
T |
|
| Q |
891 |
ttttgtccgctggacaggagagcaaa |
916 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
44184926 |
ttttgtccgctggacaggagagcaaa |
44184901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 7 - 432
Target Start/End: Complemental strand, 1326774 - 1326315
Alignment:
| Q |
7 |
aggaacatattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaac |
106 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||| ||| | |||||| ||||||| |||||||| | ||| |||||||||||||||||| |
|
|
| T |
1326774 |
aggaacagtttccaattccttagtagctggattccataatgcaacaaattcatgatcacgatcagataaacaaagaacgtcgttaataccagaatccaac |
1326675 |
T |
|
| Q |
107 |
atatcaatataaatat------catcctgttgaaatgaaactggccatttcaaat-------------aaattcctcagcagagagcaaatacagattga |
187 |
Q |
| |
|
|||| | ||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| | |
|
|
| T |
1326674 |
atattagtataactataaacctcatcctgttgaaatgaaactggccatttcaaattgaccctattctcaaatttgtcaccagagagcaaatacaattctg |
1326575 |
T |
|
| Q |
188 |
aaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaa |
287 |
Q |
| |
|
|||| ||| | |||||||| |||||||||| ||||| ||||||||||| |||| |||||||| ||| | |||||||||||||||||||||||| |||| |
|
|
| T |
1326574 |
aaccttcttgtggatgtggcaatatctcctttatattaaggaagagatatgtgtcattgtacagtgaacaatgcatagatatgaaattggtgcgaaacat |
1326475 |
T |
|
| Q |
288 |
ttgcatgaaataa--------------aagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaac |
372 |
Q |
| |
|
||||||||||| ||||||| ||| |||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||| || |
|
|
| T |
1326474 |
aggcatgaaataagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaag |
1326375 |
T |
|
| Q |
373 |
gaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggat |
432 |
Q |
| |
|
||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1326374 |
gaaatgtcatcagcaatatagctagtgttgctaaccttgtcactttttgtagccatggat |
1326315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 754 - 916
Target Start/End: Complemental strand, 10420893 - 10420731
Alignment:
| Q |
754 |
aatatagagaacagtacagaacaataaaagttgtgcggtgtttgatccaaaagataacaatggaatagaacaaaaacagtagcggagcactggacaagtc |
853 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
10420893 |
aatatagaggacatgacagaacaataaaaattgtgcagtgtttgatccaaaagataacaatggaacagaacaaaaacagtaccggagcaccggacaagtc |
10420794 |
T |
|
| Q |
854 |
tcccgaaatttgtaacccgcttaattggaggataagtttttgtccgctggacaggagagcaaa |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10420793 |
tcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagagcaaa |
10420731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 4877379 - 4877315
Alignment:
| Q |
7 |
aggaacatattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcaga |
72 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4877379 |
aggaacagtttccaattccttagtagctggattc-ataatgcaataaactgttgatcaagatcaga |
4877315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 452
Target Start/End: Complemental strand, 5387956 - 5387479
Alignment:
| Q |
7 |
aggaacatattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaac |
106 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5387956 |
aggaacattttccaattccttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcacatcattaataccagaatccaac |
5387857 |
T |
|
| Q |
107 |
atatcaatataaatatcatcctgttgaaat--gaaactggccatttcaaat---------------aaattcctcagcagagagcaaatacagattgaaa |
189 |
Q |
| |
|
|||||| | || | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
5387856 |
atatcagtttatacctcatcctgttgaaatttgaaactggccatttcaaattgacaatacctccttaaattcctcagcagagagcaaatacagattggaa |
5387757 |
T |
|
| Q |
190 |
ccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaatt |
289 |
Q |
| |
|
|| ||| |||||||||| |||||||||| |||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5387756 |
ccatcttgaggatgtggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgcataaatatgaaattggtgcggaacaatt |
5387657 |
T |
|
| Q |
290 |
gcatgaaat--------------aaaagagaccatgatttggag-cacaagtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaacga |
374 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5387656 |
gcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaagga |
5387557 |
T |
|
| Q |
375 |
aatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatttctttctggaacgtgaagc |
452 |
Q |
| |
|
||| ||||| | ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
5387556 |
aatgtcatcggaaatatagttactgttactaaccttgtcactttttgtagccattgatttctttctcgaaggtgaagc |
5387479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 754 - 916
Target Start/End: Original strand, 35341621 - 35341783
Alignment:
| Q |
754 |
aatatagagaacagtacagaacaataaaagttgtgcggtgtttgatccaaaagataacaatggaatagaacaaaaacagtagcggagcactggacaagtc |
853 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35341621 |
aatatagaggacaggacagaacaataaaagttgtgcggtgtttgatccaaaagataacaatggaacagaacaaaaacagtagcggagcactggacaagtc |
35341720 |
T |
|
| Q |
854 |
tcccgaaatttgtaacccgcttaattggaggataagtttttgtccgctggacaggagagcaaa |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35341721 |
tcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagagcaaa |
35341783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 2047 - 2135
Alignment:
| Q |
210 |
tatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat |
298 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||| |||||||||||| ||||||||| ||||||||||| |||| |||| || |||||||| |
|
|
| T |
2047 |
tatctcctttatatttaggaaaagacatgtgtcattgtacaatgatcgatgcataaatatgaaattgttgcgaaacattttcatgaaat |
2135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 2146 - 2211
Alignment:
| Q |
295 |
aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttgga |
359 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||| ||||||||||| || |||| |||||| |
|
|
| T |
2146 |
aaataaaagagaccatgacttgcatgcacaagtaaatcgcttgagagatttaagaggtagtttgga |
2211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 26531664 - 26531587
Alignment:
| Q |
209 |
atatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaaca |
286 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26531664 |
atatctcctttatatttagaaagagataagtgttgttgtacaatgactgatgcatagatatgaaatttttgcggaaca |
26531587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 27183166 - 27183114
Alignment:
| Q |
293 |
tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt |
344 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
27183166 |
tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt |
27183114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 27231119 - 27231171
Alignment:
| Q |
293 |
tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt |
344 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
27231119 |
tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt |
27231171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 26531564 - 26531509
Alignment:
| Q |
295 |
aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggg |
349 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| || |||||||||||||||| |
|
|
| T |
26531564 |
aaataaaagagaccatgatttgcacgcacaagtaaaccgcttgagagatttgaggg |
26531509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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