View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553-Insertion-5 (Length: 547)

Name: NF5553-Insertion-5
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553-Insertion-5
NF5553-Insertion-5
[»] chr1 (2 HSPs)
chr1 (217-547)||(26969122-26969452)
chr1 (8-262)||(26968880-26969134)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 217 - 547
Target Start/End: Original strand, 26969122 - 26969452
Alignment:
Q  217 tctgcagttttctgtttagcagcttccgctgtctctgcagttttctccttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969122 tctgcagttttctgtttagcagcttctgctgtctctgcagttttctgtttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat 26969221  T
Q  317 caacagcagagtctttcatctcaccaatcttccatgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt 416  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969222 caacagcagagtccttcatctcaccaatcttccacgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt 26969321  T
Q  417 cagggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgccttttcc 516  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969322 catggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgccttttcc 26969421  T
Q  517 gcagcatagtctttgtactccccagctttgt 547  Q
    |||||||||||||||||||||||||||||||    
T  26969422 gcagcatagtctttgtactccccagctttgt 26969452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 26968880 - 26969134
Alignment:
Q  8 tttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaacatttcctgcattatccatgccaaaattccacaaccactg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  26968880 tttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaacatttcctgcattatccatgcaaaaattccacaaccacta 26968979  T
Q  108 atcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggtcttgtcttttgcctctactgtcttttgcttagcagcc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  26968980 atcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggtcttgtcttttgcctctactgtcttttgtttagcagct 26969079  T
Q  208 tcagtggtttctgcagttttctgtttagcagcttccgctgtctctgcagttttct 262  Q
    || |  || |||||||||||||||||||||||||| |||||||||||||||||||    
T  26969080 tctgctgtctctgcagttttctgtttagcagcttctgctgtctctgcagttttct 26969134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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