View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553-Insertion-9 (Length: 194)

Name: NF5553-Insertion-9
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553-Insertion-9
NF5553-Insertion-9
[»] chr1 (3 HSPs)
chr1 (128-194)||(8774763-8774829)
chr1 (27-83)||(8774637-8774696)
chr1 (154-182)||(35218055-35218083)
[»] scaffold0233 (1 HSPs)
scaffold0233 (129-185)||(17042-17098)
[»] chr4 (3 HSPs)
chr4 (133-184)||(40390884-40390935)
chr4 (129-182)||(15882250-15882303)
chr4 (159-191)||(46472443-46472475)
[»] chr5 (3 HSPs)
chr5 (129-179)||(26724110-26724160)
chr5 (129-182)||(35529776-35529829)
chr5 (128-182)||(15069927-15069981)
[»] chr2 (6 HSPs)
chr2 (128-182)||(34904007-34904061)
chr2 (154-192)||(35954448-35954486)
chr2 (154-182)||(2136799-2136827)
chr2 (154-182)||(24490696-24490724)
chr2 (154-190)||(27694415-27694451)
chr2 (129-181)||(29242680-29242732)
[»] chr8 (8 HSPs)
chr8 (129-182)||(26938775-26938828)
chr8 (159-194)||(43536259-43536294)
chr8 (129-182)||(17153534-17153587)
chr8 (129-182)||(24292299-24292352)
chr8 (129-182)||(26938537-26938590)
chr8 (154-182)||(2415095-2415123)
chr8 (154-182)||(17157121-17157149)
chr8 (154-194)||(42950266-42950306)
[»] scaffold0627 (1 HSPs)
scaffold0627 (154-194)||(6804-6844)
[»] chr6 (2 HSPs)
chr6 (154-193)||(10516713-10516752)
chr6 (131-182)||(25042954-25043005)
[»] chr3 (7 HSPs)
chr3 (131-182)||(20336777-20336828)
chr3 (129-190)||(39340758-39340820)
chr3 (129-182)||(52423006-52423057)
chr3 (159-192)||(51419533-51419566)
chr3 (129-182)||(52423201-52423254)
chr3 (154-182)||(20337008-20337036)
chr3 (154-182)||(45857589-45857617)
[»] scaffold0478 (1 HSPs)
scaffold0478 (154-182)||(3218-3246)
[»] scaffold0020 (1 HSPs)
scaffold0020 (154-182)||(152079-152107)
[»] chr7 (1 HSPs)
chr7 (154-182)||(28545262-28545290)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 8774763 - 8774829
Alignment:
Q  128 cagggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacctttattttttat 194  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8774763 cagggactaaacatgaaatctcgtgattttgtagggactaaaaacatatttaacctttattttttat 8774829  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 8774637 - 8774696
Alignment:
Q  27 tgatattgcagtttgtaagaataatc---ctttttcaaaatagtcattacaaaaaatgga 83  Q
    ||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||    
T  8774637 tgatattgcagtttgtaagaataatccttctttttcaaaatagtcatcacaaaaaatgga 8774696  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 35218083 - 35218055
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  35218083 ttttgtagggactaaaaacatatttaacc 35218055  T

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Target: scaffold0233 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 17042 - 17098
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaaccttt 185  Q
    ||||| ||||| ||||| |||||| |||| |||||||||||||||||||||||||||    
T  17042 agggattaaacctgaaaactcgtgattttatagggactaaaaacatatttaaccttt 17098  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 40390935 - 40390884
Alignment:
Q  133 actaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacctt 184  Q
    ||||||| ||||| ||| || |||||||||||||||||||||||||||||||    
T  40390935 actaaacttgaaaactcatgattttgtagggactaaaaacatatttaacctt 40390884  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 15882250 - 15882303
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||| | | ||| ||| || |||||||||||||||||||||||||||||    
T  15882250 agggactaagcttaaaaactcatgattttgtagggactaaaaacatatttaacc 15882303  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 46472443 - 46472475
Alignment:
Q  159 tagggactaaaaacatatttaacctttattttt 191  Q
    |||||||||||||||||||||||| ||||||||    
T  46472443 tagggactaaaaacatatttaaccattattttt 46472475  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 26724160 - 26724110
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatattta 179  Q
    |||||||||||  |||| |||||| ||||||||||||||||||||||||||    
T  26724160 agggactaaactcgaaaactcgtgattttgtagggactaaaaacatattta 26724110  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 35529776 - 35529829
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||||| |||||  ||||| |||| ||||||||||||||||||||||||    
T  35529776 agggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacc 35529829  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 15069981 - 15069927
Alignment:
Q  128 cagggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||| ||| ||| || ||||||||||  |||||||||||||||||    
T  15069981 cagggactaaacataaaaactcatgattttgtagggcataaaaacatatttaacc 15069927  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 34904061 - 34904007
Alignment:
Q  128 cagggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||| | ||| || ||| |||||||||||||||||||||||||||||    
T  34904061 cagggactaaacttaaaaacttgtgattttgtagggactaaaaacatatttaacc 34904007  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 35954448 - 35954486
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacctttatttttt 192  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  35954448 ttttgtagggactaaaaacatatttaacccttaattttt 35954486  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 2136799 - 2136827
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  2136799 ttttgtagggactaaaaacatatttaacc 2136827  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 24490696 - 24490724
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  24490696 ttttgtagggactaaaaacatatttaacc 24490724  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 27694451 - 27694415
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacctttatttt 190  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  27694451 ttttatagggactaaaaacatatttaacctttttttt 27694415  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 29242680 - 29242732
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaac 181  Q
    ||||||||||| ||||| ||| |  ||||||||||||||||||| ||||||||    
T  29242680 agggactaaacttgaaaactcctaattttgtagggactaaaaacgtatttaac 29242732  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 26938828 - 26938775
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||||||| ||| || ||  |||||||||||||||||||||||||||||    
T  26938828 agggactaaacataaaagcttgtaattttgtagggactaaaaacatatttaacc 26938775  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 43536259 - 43536294
Alignment:
Q  159 tagggactaaaaacatatttaacctttattttttat 194  Q
    |||||||||||||||||||||||| |||||||||||    
T  43536259 tagggactaaaaacatatttaacccttattttttat 43536294  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 17153587 - 17153534
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||| | | ||| ||| || |||||||||||||||||||||||||||||    
T  17153587 agggactaagcttaaaaactcatgattttgtagggactaaaaacatatttaacc 17153534  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 24292299 - 24292352
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||||| ||||| || ||| |||| ||||||||||||||| ||||||||    
T  24292299 agggactaaacttgaaagcttgtgattttttagggactaaaaacacatttaacc 24292352  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 26938590 - 26938537
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||||| | ||| || ||  |||||||||||||||||||||||||||||    
T  26938590 agggactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaacc 26938537  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 2415095 - 2415123
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  2415095 ttttgtagggactaaaaacatatttaacc 2415123  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 17157121 - 17157149
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  17157121 ttttgtagggactaaaaacatatttaacc 17157149  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 42950266 - 42950306
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacctttattttttat 194  Q
    |||| ||||||| ||||||||||||||||||| ||||||||    
T  42950266 ttttatagggaccaaaaacatatttaaccttttttttttat 42950306  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 6844 - 6804
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacctttattttttat 194  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  6844 ttttatagggactaaaaatatatttaacctttattttttat 6804  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 10516713 - 10516752
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacctttatttttta 193  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  10516713 ttttgtagggactaaaaacatatttaaccaatatttttta 10516752  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 25042954 - 25043005
Alignment:
Q  131 ggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||  ||||| ||| || |||||||||||||||||||||||||||||    
T  25042954 ggactaaatttgaaaactcatgattttgtagggactaaaaacatatttaacc 25043005  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 20336828 - 20336777
Alignment:
Q  131 ggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||  ||||| ||| || |||||||||||||||||||||||||||||    
T  20336828 ggactaaagttgaaaactcttgattttgtagggactaaaaacatatttaacc 20336777  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 39340820 - 39340758
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaa-cctttatttt 190  Q
    ||||||||||| | ||| || ||| ||||||||||||| ||||||||||||| ||||||||||    
T  39340820 agggactaaacttaaaaactagtgattttgtagggactcaaaacatatttaaccctttatttt 39340758  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 52423057 - 52423006
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||||||||| ||||| |||||| |||||||||||||  ||||||||||||||    
T  52423057 agggactaaacttgaaaactcgtgattttgtagggact--aaacatatttaacc 52423006  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 51419566 - 51419533
Alignment:
Q  159 tagggactaaaaacatatttaacctttatttttt 192  Q
    |||||||||||||||||||||||| |||||||||    
T  51419566 tagggactaaaaacatatttaacccttatttttt 51419533  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 52423201 - 52423254
Alignment:
Q  129 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 182  Q
    ||||| ||||||||||| ||  |  |||||||||||||||||||||||||||||    
T  52423201 agggattaaacatgaaaacttataattttgtagggactaaaaacatatttaacc 52423254  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 20337008 - 20337036
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  20337008 ttttgtagggactaaaaacatatttaacc 20337036  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 45857617 - 45857589
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  45857617 ttttgtagggactaaaaacatatttaacc 45857589  T

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Target: scaffold0478 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 3246 - 3218
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  3246 ttttgtagggactaaaaacatatttaacc 3218  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 152107 - 152079
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  152107 ttttgtagggactaaaaacatatttaacc 152079  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 28545262 - 28545290
Alignment:
Q  154 ttttgtagggactaaaaacatatttaacc 182  Q
    |||||||||||||||||||||||||||||    
T  28545262 ttttgtagggactaaaaacatatttaacc 28545290  T

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