View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553_high_1 (Length: 504)

Name: NF5553_high_1
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553_high_1
NF5553_high_1
[»] chr2 (2 HSPs)
chr2 (332-493)||(21754712-21754873)
chr2 (332-493)||(21768857-21769018)
[»] chr4 (7 HSPs)
chr4 (113-224)||(720352-720463)
chr4 (113-203)||(702712-702802)
chr4 (113-203)||(771011-771101)
chr4 (401-487)||(3357446-3357533)
chr4 (401-487)||(3367112-3367199)
chr4 (280-320)||(732530-732570)
chr4 (375-432)||(49890941-49890998)
[»] chr6 (4 HSPs)
chr6 (359-493)||(27642639-27642763)
chr6 (401-487)||(34269866-34269952)
chr6 (386-487)||(20074413-20074514)
chr6 (359-409)||(33252697-33252747)
[»] scaffold0007 (1 HSPs)
scaffold0007 (386-493)||(62365-62472)
[»] chr8 (1 HSPs)
chr8 (386-493)||(15831017-15831124)
[»] chr5 (2 HSPs)
chr5 (375-493)||(36432460-36432578)
chr5 (375-500)||(36432813-36432938)
[»] chr7 (6 HSPs)
chr7 (375-487)||(4890206-4890318)
chr7 (401-487)||(792947-793033)
chr7 (401-487)||(808730-808816)
chr7 (401-487)||(3423581-3423668)
chr7 (449-493)||(16264832-16264875)
chr7 (449-493)||(16272498-16272541)
[»] scaffold0278 (2 HSPs)
scaffold0278 (359-410)||(14893-14944)
scaffold0278 (359-410)||(18227-18278)
[»] scaffold0016 (1 HSPs)
scaffold0016 (359-409)||(57617-57667)
[»] scaffold0560 (1 HSPs)
scaffold0560 (375-432)||(9834-9891)
[»] scaffold0014 (1 HSPs)
scaffold0014 (375-432)||(187660-187717)
[»] chr3 (7 HSPs)
chr3 (362-412)||(27873277-27873327)
chr3 (449-493)||(3675871-3675914)
chr3 (449-493)||(3685006-3685049)
chr3 (449-493)||(20434829-20434872)
chr3 (449-493)||(20448755-20448798)
chr3 (449-493)||(30021705-30021748)
chr3 (449-493)||(41431995-41432038)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 332 - 493
Target Start/End: Complemental strand, 21754873 - 21754712
Alignment:
Q  332 ttgaaataaaaatgattnnnnnnnccagagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccc 431  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21754873 ttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccc 21754774  T
Q  432 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21754773 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 21754712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 332 - 493
Target Start/End: Complemental strand, 21769018 - 21768857
Alignment:
Q  332 ttgaaataaaaatgattnnnnnnnccagagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccc 431  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  21769018 ttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccagaccc 21768919  T
Q  432 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21768918 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 21768857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 720352 - 720463
Alignment:
Q  113 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttctgttcttttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  720352 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttcttttcttttg 720451  T
Q  213 tgtaggatatga 224  Q
    ||||||||||||    
T  720452 tgtaggatatga 720463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 702802 - 702712
Alignment:
Q  113 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702802 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 702712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 771101 - 771011
Alignment:
Q  113 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  771101 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 771011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 401 - 487
Target Start/End: Original strand, 3357446 - 3357533
Alignment:
Q  401 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 487  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3357446 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3357533  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 401 - 487
Target Start/End: Original strand, 3367112 - 3367199
Alignment:
Q  401 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 487  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3367112 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3367199  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 732530 - 732570
Alignment:
Q  280 ctatatatatgcattacattccaattaatatatcaaaacac 320  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  732530 ctatatatatgcattacattccaattaatatatcaaaacac 732570  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 49890941 - 49890998
Alignment:
Q  375 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 432  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  49890941 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 49890998  T

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Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 359 - 493
Target Start/End: Original strand, 27642639 - 27642763
Alignment:
Q  359 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggccc 458  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  27642639 gagctgtgtatttataaaagggattggagcggttcaacccctgaaccggtct----------attccaggcccacacgcgcccggcctcacccaaggccc 27642728  T
Q  459 aaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||||||||||||||||||||||||||    
T  27642729 aaatcctcttcattttattttctgcaccctccttt 27642763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 401 - 487
Target Start/End: Original strand, 34269866 - 34269952
Alignment:
Q  401 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 487  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  34269866 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 34269952  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 386 - 487
Target Start/End: Complemental strand, 20074514 - 20074413
Alignment:
Q  386 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 485  Q
    ||||||||||||   ||||||||||||||| ||||| |||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  20074514 accggttcaaccttggaaccggtctgaaccggtctaatccaagcccacacgcgtctggcttcacccaaggcccaaatcctcttcattttatttcctgcac 20074415  T
Q  486 cc 487  Q
    ||    
T  20074414 cc 20074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 33252697 - 33252747
Alignment:
Q  359 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 409  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  33252697 gagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 33252747  T

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Target: scaffold0007 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 62365 - 62472
Alignment:
Q  386 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 485  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  62365 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 62464  T
Q  486 cctccttt 493  Q
    ||||||||    
T  62465 cctccttt 62472  T

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Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 15831017 - 15831124
Alignment:
Q  386 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 485  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15831017 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 15831116  T
Q  486 cctccttt 493  Q
    ||||||||    
T  15831117 cctccttt 15831124  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 375 - 493
Target Start/End: Original strand, 36432460 - 36432578
Alignment:
Q  375 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 474  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  36432460 aaagggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagcccacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 36432559  T
Q  475 attttctgcaccctccttt 493  Q
    ||||||||||||| |||||    
T  36432560 attttctgcaccccccttt 36432578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 375 - 500
Target Start/End: Original strand, 36432813 - 36432938
Alignment:
Q  375 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 474  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| || |||||||| | |||||||||||||||||||||||||||||||||    
T  36432813 aaagggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagctcacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 36432912  T
Q  475 attttctgcaccctcctttgctactc 500  Q
    ||||||||||||| ||||| ||||||    
T  36432913 attttctgcacccccctttactactc 36432938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 4890318 - 4890206
Alignment:
Q  375 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 474  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  4890318 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaagcccacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 4890219  T
Q  475 attttctgcaccc 487  Q
    |||||||||||||    
T  4890218 attttctgcaccc 4890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 401 - 487
Target Start/End: Complemental strand, 793033 - 792947
Alignment:
Q  401 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 487  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  793033 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 792947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 487
Target Start/End: Complemental strand, 808816 - 808730
Alignment:
Q  401 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 487  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||    
T  808816 gaaccggtctgaaccggtctattccaagcccacacgcgcctggcctcacccaagacccaaatccttttcgttttattttctgcaccc 808730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 401 - 487
Target Start/End: Complemental strand, 3423668 - 3423581
Alignment:
Q  401 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 487  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| ||||||||||||    
T  3423668 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctnacccaagacccaaatccttttcgttttatttttctgcaccc 3423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 16264875 - 16264832
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  16264875 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 16264832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 16272541 - 16272498
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  16272541 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 16272498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 14944 - 14893
Alignment:
Q  359 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 410  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  14944 gagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 14893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 18278 - 18227
Alignment:
Q  359 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 410  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  18278 gagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 18227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 57667 - 57617
Alignment:
Q  359 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 409  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  57667 gagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 57617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0560 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 9834 - 9891
Alignment:
Q  375 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 432  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  9834 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 9891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 432
Target Start/End: Complemental strand, 187717 - 187660
Alignment:
Q  375 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 432  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  187717 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 187660  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 27873277 - 27873327
Alignment:
Q  362 ctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctga 412  Q
    |||| |||||||||  ||||||| |||||||||||| ||||||||||||||    
T  27873277 ctgtctatttataacggggattgaaccggttcaacctctgaaccggtctga 27873327  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 3675871 - 3675914
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3675871 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 3675914  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 3685006 - 3685049
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3685006 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 3685049  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 20434829 - 20434872
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20434829 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 20434872  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 20448755 - 20448798
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20448755 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 20448798  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 30021705 - 30021748
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  30021705 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 30021748  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 41431995 - 41432038
Alignment:
Q  449 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 493  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  41431995 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 41432038  T

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