View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_high_13 (Length: 254)
Name: NF5553_high_13
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_13 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 44186586 - 44186346
Alignment:
| Q |
16 |
aatatgcagtaggaaagatagtagagcattgaaataataatggtaaaggaaggttcatatcataaatgtatta--caagaaaacagcaagcccatttcta |
113 |
Q |
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| T |
44186586 |
aatatgcagtaggaaagatagaagagcattgaaataataatggtaaaggaaggttcatatcataaatgtattatacaagaaaacagcaagcccatttcta |
44186487 |
T |
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| Q |
114 |
ttgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggata |
213 |
Q |
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| T |
44186486 |
ttgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaagtttggata |
44186387 |
T |
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| Q |
214 |
cagaaacacccaactcctaattcggcgaaacgaaagaaggt |
254 |
Q |
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| T |
44186386 |
cagaaacacctaactcctaattcggcgaaacgaaagaaggt |
44186346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 4878470 - 4878237
Alignment:
| Q |
16 |
aatatgcagtaggaaagatagtagagcattgaaataataatggtaaaggaaggttcatatcataaatgtat--tacaagaaaac--agcaagcccatttc |
111 |
Q |
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| T |
4878470 |
aatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtacactaagcatgcccatttg |
4878371 |
T |
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| Q |
112 |
tattgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttgga |
211 |
Q |
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| T |
4878370 |
tattgaaatggcttcagaacattcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgggtgaacgctataaacttggga |
4878271 |
T |
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| Q |
212 |
tacagaaacacccaactcctaattcggcgaaacg |
245 |
Q |
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| T |
4878270 |
tacagaaacacctaattcctaattcggcgtaacg |
4878237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 1327612 - 1327501
Alignment:
| Q |
138 |
cttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggatacagaaacacccaactcctaattcg |
237 |
Q |
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| T |
1327612 |
cttggtaataaaatcttaaatcctaacaacaagaatactcataaagctcttgggtgaaagctataaacttgggatacaaaaacacctaattcctaattcc |
1327513 |
T |
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| Q |
238 |
gcgaaacgaaag |
249 |
Q |
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| T |
1327512 |
gataaacgaaag |
1327501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 1327777 - 1327716
Alignment:
| Q |
16 |
aatatgcagtaggaaagatagtagagcattgaaataataatggtaaaggaaggttcatatca |
77 |
Q |
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| T |
1327777 |
aatatgcaataggtaagagagtagagcattgaaataataatggtaaagaaaggttcatatca |
1327716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 1327672 - 1327623
Alignment:
| Q |
92 |
gaaaacagcaagcccatttctattgaaatggcttcagaacattcaacttg |
141 |
Q |
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| T |
1327672 |
gaaaacagaaagccaatttgtattgaaatggcttcagaatattcaacttg |
1327623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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