View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5553_high_16 (Length: 237)
Name: NF5553_high_16
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_16 |
 | |
|
| [»] scaffold0831 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44185976 - 44185754
Alignment:
| Q |
1 |
tatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
44185976 |
tatccaagggtaaatgtgtagttaagaaattatcatcgctcaagttaaaagaaaccatgtatggatcagctacattcgtatacgcccaccaatggcacaa |
44185877 |
T |
|
| Q |
101 |
tccattcaagtacacctcatgacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44185876 |
tccattcaagtacacctcatgacgaatgatcttatagtcgtcattaatagggtcatagccatatccatgaagatgaaaccaaacagtattaaaaggtaaa |
44185777 |
T |
|
| Q |
200 |
gactcaggtgggctaggaggaac |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44185776 |
gactcaggtgggctaggaggaac |
44185754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 4877479 - 4877374
Alignment:
| Q |
118 |
catgacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaagactcaggtgggctagg |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
4877479 |
catgacgaatgatcttatagtcgttattaacagggtcatagccatatccatgaagatgaaaccaaacagtattaaaaggtaaagactcagttgggctagg |
4877380 |
T |
|
| Q |
217 |
aggaac |
222 |
Q |
| |
|
|||||| |
|
|
| T |
4877379 |
aggaac |
4877374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 1326869 - 1326792
Alignment:
| Q |
123 |
cgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1326869 |
cgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaa |
1326792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 1327135 - 1327019
Alignment:
| Q |
1 |
tatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaa |
100 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||| | | | | |||||||||||| |||| |
|
|
| T |
1327135 |
tatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtatgcatcagctacattcgtgttcgcccaccaatgacacat |
1327036 |
T |
|
| Q |
101 |
tccattcaagtacacct |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1327035 |
tccattcaagtacacct |
1327019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 5388053 - 5387967
Alignment:
| Q |
121 |
gacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaagactcag |
206 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
5388053 |
gacgaatgatcttatagtcgtcattaatagggtcataaccatacccatgaagacaaaaccaaacagtattaaaaggtaaagactcag |
5387967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 5388269 - 5388179
Alignment:
| Q |
25 |
agaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacac |
115 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||| ||| || ||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
5388269 |
agaagttctcattgctcaagttaaaagaaaccatgtatgcatcatctatatctctattcgcccaccaatgacacagtccattcaagtacac |
5388179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 26531978 - 26531929
Alignment:
| Q |
122 |
acgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaa |
171 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
|
|
| T |
26531978 |
acgaatgatcttatagtcatcattaacatggtcataaccacatccatgaa |
26531929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 1749 - 1802
Alignment:
| Q |
118 |
catgacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaa |
171 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||||||| ||| ||||||||| |
|
|
| T |
1749 |
catgacgaacaatcttatagtcgttattaacatggtcataaccaaatccatgaa |
1802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University