View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553_high_17 (Length: 237)

Name: NF5553_high_17
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553_high_17
NF5553_high_17
[»] chr1 (8 HSPs)
chr1 (1-135)||(46592539-46592673)
chr1 (121-237)||(33726893-33727009)
chr1 (182-237)||(46592305-46592360)
chr1 (144-227)||(32827280-32827363)
chr1 (67-135)||(34861282-34861351)
chr1 (90-135)||(35259116-35259161)
chr1 (59-135)||(39912280-39912357)
chr1 (95-135)||(35543473-35543513)
[»] chr5 (8 HSPs)
chr5 (144-237)||(15635270-15635363)
chr5 (144-237)||(32273653-32273746)
chr5 (121-237)||(14089753-14089869)
chr5 (121-237)||(606418-606534)
chr5 (121-237)||(9784584-9784700)
chr5 (177-237)||(13542266-13542326)
chr5 (124-226)||(38037389-38037491)
chr5 (70-135)||(24041093-24041158)
[»] chr2 (4 HSPs)
chr2 (146-237)||(9707293-9707384)
chr2 (144-233)||(44277697-44277786)
chr2 (144-213)||(5552374-5552443)
chr2 (157-227)||(21455115-21455185)
[»] chr4 (10 HSPs)
chr4 (121-237)||(3161735-3161851)
chr4 (146-237)||(3657753-3657844)
chr4 (144-213)||(25231724-25231793)
chr4 (121-237)||(30599760-30599875)
chr4 (121-237)||(38298549-38298665)
chr4 (144-213)||(43968387-43968456)
chr4 (155-236)||(52676502-52676583)
chr4 (157-237)||(37977987-37978067)
chr4 (68-135)||(2063444-2063511)
chr4 (99-135)||(24546778-24546814)
[»] chr7 (6 HSPs)
chr7 (144-237)||(34967924-34968017)
chr7 (121-237)||(5355901-5356016)
chr7 (68-131)||(34681661-34681724)
chr7 (144-213)||(30833646-30833715)
chr7 (120-237)||(17000547-17000663)
chr7 (90-135)||(27338253-27338298)
[»] chr3 (8 HSPs)
chr3 (146-227)||(52315315-52315396)
chr3 (155-236)||(7932361-7932442)
chr3 (122-226)||(39994545-39994649)
chr3 (147-237)||(31153403-31153493)
chr3 (121-237)||(42004274-42004390)
chr3 (146-214)||(42760620-42760688)
chr3 (144-237)||(28963687-28963780)
chr3 (99-135)||(48551040-48551076)
[»] chr8 (6 HSPs)
chr8 (122-237)||(40678975-40679090)
chr8 (59-134)||(38019489-38019561)
chr8 (144-213)||(7207014-7207083)
chr8 (144-209)||(40229013-40229078)
chr8 (99-135)||(25279929-25279965)
chr8 (99-135)||(31264997-31265033)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 46592673 - 46592539
Alignment:
Q  1 aggaagtggtgtttgcactttgcagaagaagattattcaggccaattgaccactctgtataaaacaagggtcttcttaacgagtgctagggggtactatt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | || |||||||||| ||  ||||||| ||    
T  46592673 aggaagtggtgtttgcactttgcaggagaagattattcaggccaattgaccactctctataaaacaaggattttgttaacgagtgttacagggtactctt 46592574  T
Q  101 taagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||||||||||||||| ||||| ||||||||    
T  46592573 taagcatgctaaattaggaagttattctttaaaaa 46592539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 33726893 - 33727009
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||  ||| |||||||| |||||||||||||| |||| || |||  ||||||| |||||| || |||||||||||||||||||| |    
T  33726893 attattttttaataacagtatctaataggtactcattcactccaataaagacctcctggtaaaaagtctaaatgagtcccacaactaactcttcctcatt 33726992  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||||||||    
T  33726993 tacattccaccactaac 33727009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 46592360 - 46592305
Alignment:
Q  182 aaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46592360 aaaagtttaaatggataccacaactaactcttcctcacttacattcaaccactaac 46592305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 32827363 - 32827280
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattc 227  Q
    ||||||||| ||||||||||||| |||| ||  || | |||||| ||||||||| |||||||||||||||||||| ||||||||    
T  32827363 aataggtatacattcactccaataaagacctattggctaaaagtctaaatgggttccacaactaactcttcctcatttacattc 32827280  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 34861351 - 34861282
Alignment:
Q  67 agggtcttcttaacgagtgcta-gggggtactatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||| |||||||||||   ||||| ||| ||||||||| |||||||| | ||||||||||||||||    
T  34861351 agggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaa 34861282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 35259161 - 35259116
Alignment:
Q  90 ggggtactatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||| ||| |||||| ||||||||||| ||||||||||||||||||    
T  35259161 ggggcactctttaagtatgctaaattaagaaattattttttaaaaa 35259116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 39912357 - 39912280
Alignment:
Q  59 ataaaacaagggtcttcttaacgagtgctagggggt-actatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||| ||||||||| |||||||||||    |||  ||| |||||||||||||||||||||| ||||| ||||||||    
T  39912357 ataaaaaaagggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaggaagttattatttaaaaa 39912280  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 35543513 - 35543473
Alignment:
Q  95 actatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||||||||||||||||| | ||||||||||| ||||    
T  35543513 actatttaagcatgctaaattaagtaattatttttttaaaa 35543473  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 15635270 - 15635363
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||||||| ||||||||||||||| ||| ||| || |||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||    
T  15635270 aataggtactcattcactccaatggagaccttttggcaaaaagtttaaatgggtcccacaactaactctttctcatttacattccaccactaac 15635363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 32273653 - 32273746
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||| ||| |||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||    
T  32273653 aataagtactcattcactctaatggagatcttctggcaaaaagtttaaatgggtcccacaactaactcttcatcatttacattccaccactaac 32273746  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 14089753 - 14089869
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||| ||| |||||||| ||||||||| ||||  ||| ||| |  |||||||| ||||| ||| |||||||||||||||||||| |    
T  14089753 attattttttaataacaatatctaataggtactcattcacttcaatatagaccttttagcaaaaagtataaataggttccacaactaactcttcctcatt 14089852  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||||||||    
T  14089853 tacattccaccactaac 14089869  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 606418 - 606534
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||  | | |||||||| ||||||||||||||| |||  || || |||||| | ||||||||| ||||||||||||||||||||      
T  606418 attattttttaacaacagtacctaataggtactcattcactccaatgtagacattttggcaaaaaatctaaatgggtcccacaactaactcttcctcatc 606517  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||||||||    
T  606518 tacattccaccactaac 606534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 9784584 - 9784700
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||| |   |||||||| |||||||||||| |  ||| |||||| |||||||| |||||  || | |||||||||||||||||  |    
T  9784584 attattttttaataacaatacttaataggtactcattcactccactagagaccttctggcaaaaagtctaaatatgtcctacaactaactcttcctcgtt 9784683  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||||||||    
T  9784684 tacattccaccactaac 9784700  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 13542266 - 13542326
Alignment:
Q  177 tgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    ||||||||||| ||||||||| | |||||||||||||||||| || ||||| |||||||||    
T  13542266 tgacaaaaagtctaaatgggtcctacaactaactcttcctcatttgcattccaccactaac 13542326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 38037491 - 38037389
Alignment:
Q  124 attttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttac 223  Q
    ||||||||| || || ||| |||||||| ||| ||||||||||  |||   ||| ||||||||||||||||||| |||| | ||||||||  ||| ||||    
T  38037491 attttttaataataatatctaataggtactcaatcactccaatagagaatctctaacaaaaagtttaaatgggttccaccaataactctttatcatttac 38037392  T
Q  224 att 226  Q
    |||    
T  38037391 att 38037389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 24041158 - 24041093
Alignment:
Q  70 gtcttcttaacgagtgctagggggtactatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    ||||| ||||||||||||  |||||||| |||||||||   |||||| ||||||||| ||||||||    
T  24041158 gtcttgttaacgagtgctccggggtactctttaagcatatcaaattatgaaattattctttaaaaa 24041093  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 9707293 - 9707384
Alignment:
Q  146 taggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||||| ||||||||||||||| | ||||||||||||||| | ||||||||| |||||||||||||||| ||| |||||||| |||||||||    
T  9707293 taggtactcattcactccaatggaaatcttctgacaaaaattctaaatgggtcccacaactaactcttcatcatttacattccaccactaac 9707384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 44277786 - 44277697
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccac 233  Q
    |||||||| ||||||||||||||||||| |||||   ||||||| ||||||||| |||||||||||||||| ||| |||||||| |||||    
T  44277786 aataggtactcattcactccaatgaagaacttcttgtaaaaagtctaaatgggtcccacaactaactcttcttcatttacattccaccac 44277697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 5552374 - 5552443
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactctt 213  Q
    |||||||| ||  ||||||||||| ||||||||| ||||||||| |||||| || |||| ||||||||||    
T  5552374 aataggtactcggtcactccaatggagatcttctaacaaaaagtctaaatgtgtcccaccactaactctt 5552443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 21455115 - 21455185
Alignment:
Q  157 tcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattc 227  Q
    ||||||||||| ||||| | ||||| || |||||||| ||| |||| ||||||||||| ||| ||||||||    
T  21455115 tcactccaatggagatcctttgacagaaggtttaaatcggttccacgactaactcttcatcatttacattc 21455185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 3161735 - 3161851
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||  | | |||||||| |||||||||||||| |||| ||||||||||||||| ||||| ||| ||| |||||||| ||| ||| |    
T  3161735 attattttttaataacagtacctaataggtactcattcactccaataaagaccttctgacaaaaagtctaaataggtcccataactaacttttcatcatt 3161834  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||||||||    
T  3161835 tacattccaccactaac 3161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 3657844 - 3657753
Alignment:
Q  146 taggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||||| ||||||||||||||| | | ||||| ||||||||| ||||||||| |||||||||||||||| ||| ||| |||| |||||||||    
T  3657844 taggtactcattcactccaatggaaaccttctaacaaaaagtctaaatgggtcccacaactaactcttcatcatttatattccaccactaac 3657753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 25231724 - 25231793
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactctt 213  Q
    |||||||| ||  ||||||||||||||||||||| ||||||||| |||||||||  ||| ||||||||||    
T  25231724 aataggtactcggtcactccaatgaagatcttctaacaaaaagtctaaatgggtctcaccactaactctt 25231793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 30599875 - 30599760
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||  | | || ||||| ||||||||||||||| ||| ||| || |||||||| |||||| || ||||| || ||||||||||| |    
T  30599875 attattttttaataacagtacctaaaaggtactcattcactccaatggagaccttatggcaaaaagtctaaatgagtcccacacct-actcttcctcatt 30599777  T
Q  221 tacattcaaccactaac 237  Q
    | ||||| |||||||||    
T  30599776 tgcattccaccactaac 30599760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 38298665 - 38298549
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||  | | |||||||| |||| |||||||| | ||||||| || |||||||| ||||| ||| ||| | |||||| ||||||  |    
T  38298665 attattttttaataacagtacctaataggtactcatccactccaaaggagatcttatggcaaaaagtctaaataggttccatagctaactattcctcgtt 38298566  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||||||||    
T  38298565 tacattccaccactaac 38298549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 43968387 - 43968456
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactctt 213  Q
    |||||||| ||  ||||||||||| ||||||||| ||||||||| ||||||| | |||| ||||||||||    
T  43968387 aataggtactcggtcactccaatggagatcttctaacaaaaagtctaaatggatcccaccactaactctt 43968456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 52676502 - 52676583
Alignment:
Q  155 attcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaa 236  Q
    ||||||||||||  |||  ||||| |||||||| ||||||| | | |||||||||||||| ||| |||||||| ||||||||    
T  52676502 attcactccaatagagacattctggcaaaaagtctaaatggatccgacaactaactcttcttcatttacattccaccactaa 52676583  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 37977987 - 37978067
Alignment:
Q  157 tcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||||||||||||||| |||| ||||||||| ||||||||| |||  | ||||||||  ||| ||| |||| |||||||||    
T  37977987 tcactccaatgaagatattctaacaaaaagtctaaatgggtcccatcaataactcttaatcatttaaattccaccactaac 37978067  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 2063444 - 2063511
Alignment:
Q  68 gggtcttcttaacgagtgctagggggtactatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    ||||||| ||||||||||||   ||  ||| |||||||||||||||||||||| ||||| ||||||||    
T  2063444 gggtcttgttaacgagtgctcccggacactctttaagcatgctaaattaggaagttattctttaaaaa 2063511  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 24546814 - 24546778
Alignment:
Q  99 tttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  24546814 tttaagcatgttaaattaggaaattattctttaaaaa 24546778  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 34968017 - 34967924
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||| ||||||||||||||||||| |||||| |||| ||||||||||| || || |||||| |||||||| |||| |||| ||| |||||||||    
T  34968017 aatatgtattcattcactccaatggagatctcctgataaaaagtttaagtgagtcccacaattaactcttactcatttactttccaccactaac 34967924  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 5356016 - 5355901
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| ||||  | | |||||||| ||||||| ||||||  |||  |||||||||||||||||||||| | |||||  |||||||| |||| |    
T  5356016 attattttttaataacagtacctaataggtactcattcattccaatagagactttctgacaaaaagtttaaatggatcccacagttaactctt-ctcatt 5355918  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||| ||||    
T  5355917 tacattccaccattaac 5355901  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 34681661 - 34681724
Alignment:
Q  68 gggtcttcttaacgagtgctagggggtactatttaagcatgctaaattaggaaattatttttta 131  Q
    |||||||||||||||||||   |||| | | ||||||||| |||||||||||||||||||||||    
T  34681661 gggtcttcttaacgagtgccccggggcagtctttaagcattctaaattaggaaattatttttta 34681724  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 30833646 - 30833715
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactctt 213  Q
    |||||||| ||  ||||||||||| ||||||||| ||| |||||||||||||||  ||| ||||||||||    
T  30833646 aataggtactcggtcactccaatggagatcttctaacataaagtttaaatgggtctcaccactaactctt 30833715  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 17000547 - 17000663
Alignment:
Q  120 aattattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcac 219  Q
    ||||||||||||| || |  ||| |||||||| |||||||||| |||||||| ||| || ||||||    ||||||||  ||| ||||||| ||| |||     
T  17000547 aattattttttaataatagcatctaataggtactcattcactcaaatgaagaccttatggcaaaaaaacaaaatgggtctcac-actaacttttcatcat 17000645  T
Q  220 ttacattcaaccactaac 237  Q
    |||||||| |||||||||    
T  17000646 ttacattccaccactaac 17000663  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 27338253 - 27338298
Alignment:
Q  90 ggggtactatttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||| ||| ||||||||||||||||||| |||||||| ||||||||    
T  27338253 ggggcactctttaagcatgctaaattagaaaattattctttaaaaa 27338298  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 52315396 - 52315315
Alignment:
Q  146 taggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattc 227  Q
    ||||||||||||||||  |||| | | |||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  52315396 taggtattcattcactataatggaaaccttccgacaaaaagtctaaatgggtcccacaactaactcttcctcatttacattc 52315315  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 7932361 - 7932442
Alignment:
Q  155 attcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaa 236  Q
    ||||||| ||||| ||| ||| || |||||||| ||||||||| |||||||||||||||||| | |||||||| ||||||||    
T  7932361 attcacttcaatggagaccttatggcaaaaagtctaaatgggttccacaactaactcttccttatttacattccaccactaa 7932442  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 39994649 - 39994545
Alignment:
Q  122 ttattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcactt 221  Q
    ||||||||||| ||||  ||| |||| ||| ||||||||||||||| |||| || |  |||||| | ||||||| | |||||||||||||||||||| ||    
T  39994649 ttattttttaataacagtatctaataagtactcattcactccaatggagattttatagcaaaaactctaaatggatcccacaactaactcttcctcattt 39994550  T
Q  222 acatt 226  Q
    |||||    
T  39994549 acatt 39994545  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 31153403 - 31153493
Alignment:
Q  147 aggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    ||||| ||||||||||||||  ||| ||| || |||||||  |||||||||  ||||||||||||||| ||| |||||||| |||||||||    
T  31153403 aggtactcattcactccaatagagaccttatggcaaaaagcctaaatgggtcacacaactaactcttcatcatttacattccaccactaac 31153493  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 42004390 - 42004274
Alignment:
Q  121 attattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcact 220  Q
    |||||||||||| |||||  || |||| ||| ||||||||||||||| |||  ||| | |||||||| ||||||| | | | |||||||||||||| | |    
T  42004390 attattttttaataacaatttctaataagtactcattcactccaatggagacattccggcaaaaagtctaaatggatccaataactaactcttcctaatt 42004291  T
Q  221 tacattcaaccactaac 237  Q
    ||||||| |||| ||||    
T  42004290 tacattccaccattaac 42004274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 42760620 - 42760688
Alignment:
Q  146 taggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttc 214  Q
    |||||| ||||||| ||||||| |||  ||| |||||||||| || |||||| ||||||||||||||||    
T  42760620 taggtactcattcaatccaatggagacattcagacaaaaagtctatatgggttccacaactaactcttc 42760688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 28963780 - 28963687
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcacttacattcaaccactaac 237  Q
    |||||||| ||| ||||||||||| ||||||||| ||||| ||| |||||| || | ||  |||||||||  ||| ||| |||| |||||||||    
T  28963780 aataggtactcagtcactccaatggagatcttctaacaaatagtctaaatgagtcctaccgctaactcttaatcatttaaattccaccactaac 28963687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 48551040 - 48551076
Alignment:
Q  99 tttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48551040 tttaagcatgctaaattaagaaattattctttaaaaa 48551076  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 40679090 - 40678975
Alignment:
Q  122 ttattttttaaaaacaaaatcaaataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactcttcctcactt 221  Q
    ||||||||||| ||||  | | |||||||| ||||||||| ||||  ||||| | || |||||||| ||||||||| | ||||| |||| ||||||| ||    
T  40679090 ttattttttaataacagtacctaataggtactcattcactgcaatatagatcctttggcaaaaagtctaaatgggtcctacaaccaacttttcctcattt 40678991  T
Q  222 acattcaaccactaac 237  Q
    |||||| |||||||||    
T  40678990 acattccaccactaac 40678975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 38019561 - 38019489
Alignment:
Q  59 ataaaacaagggtcttcttaacgagtgctagggggtactatttaagcatgctaaattaggaaattattttttaaaa 134  Q
    |||||| ||||||||| ||||||||||| ||||   ||| |||||||||||||||||| ||||||||| |||||||    
T  38019561 ataaaataagggtcttgttaacgagtgccaggg---actctttaagcatgctaaattaagaaattattctttaaaa 38019489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 7207083 - 7207014
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaactctt 213  Q
    ||||||||  || ||||||||||  ||||||||| ||||||||| ||||||||| | |||||||||||||    
T  7207083 aataggtacccagtcactccaatagagatcttctaacaaaaagtctaaatgggttctacaactaactctt 7207014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 40229013 - 40229078
Alignment:
Q  144 aataggtattcattcactccaatgaagatcttctgacaaaaagtttaaatgggtaccacaactaac 209  Q
    |||||||| ||  ||||||||||||||||||| | ||||||||| ||||| ||| |||| ||||||    
T  40229013 aataggtactcggtcactccaatgaagatcttataacaaaaagtctaaataggtcccaccactaac 40229078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 25279929 - 25279965
Alignment:
Q  99 tttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  25279929 tttaagcatgctaaattaggaagttattctttaaaaa 25279965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 31264997 - 31265033
Alignment:
Q  99 tttaagcatgctaaattaggaaattattttttaaaaa 135  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  31264997 tttaagcatgctaaattaggaagttattctttaaaaa 31265033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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