View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5553_high_19 (Length: 201)
Name: NF5553_high_19
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_19 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 228458 - 228288
Alignment:
| Q |
18 |
acttccttgtattaaacccctctgctcagttgaaacaatttgaggcatgattttggctaatctatctgcaagaaccttagaaatgattttgaacttgaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
228458 |
acttccttgtattaaacccctctgctcagttgaaacaatttcaggcatgattttggctaatctatctccaagaaccttagagatgattttgaacttgaaa |
228359 |
T |
|
| Q |
118 |
ttggccattgcatggttc---annnnnnnnnngggtacaaattcattttattgttggtataagtgcatatt |
185 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228358 |
ttggccattgcatggttcttttttttttttttgggtacaaattcattttattgttggtataagtgcatatt |
228288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 14141968 - 14142026
Alignment:
| Q |
67 |
attttggctaatctatctgcaagaaccttagaaatgattttgaacttgaaattggccat |
125 |
Q |
| |
|
||||||||||| ||||| |||| || |||||| || || |||||||||||||||||||| |
|
|
| T |
14141968 |
attttggctaacctatcagcaataatcttagatataatcttgaacttgaaattggccat |
14142026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 28414 - 28358
Alignment:
| Q |
73 |
gctaatctatctgcaagaaccttagaaatgattttgaacttgaaattggccattgca |
129 |
Q |
| |
|
|||||||| |||||||| | ||| || | |||||| ||||||||||||||||||||| |
|
|
| T |
28414 |
gctaatctgtctgcaaggatcttggacaagattttaaacttgaaattggccattgca |
28358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 17630282 - 17630334
Alignment:
| Q |
73 |
gctaatctatctgcaagaaccttagaaatgattttgaacttgaaattggccat |
125 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||| || ||||| ||||| |
|
|
| T |
17630282 |
gctaatctatctgctaaaatcttagaaatgattttgaatttaaaatttgccat |
17630334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 32020005 - 32019953
Alignment:
| Q |
73 |
gctaatctatctgcaagaaccttagaaatgattttgaacttgaaattggccat |
125 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||| || ||||| ||||| |
|
|
| T |
32020005 |
gctaatctatctgctaaaatcttagaaatgattttgaatttaaaatttgccat |
32019953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University