View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_high_2 (Length: 452)
Name: NF5553_high_2
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 23129611 - 23130048
Alignment:
| Q |
1 |
cctttcaggtacctgtaaatccaaactcaaacataaacgaaacagttctaccaaatatttatacattttctgtcattctagcctatggaagcatctcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
23129611 |
cctttcaggtacctgtaaatccaaactcaaacataaacgaaacagttctaccaaatatttatacattttctgtcattctagcttatggaatcatctcaat |
23129710 |
T |
|
| Q |
101 |
tgagatatgcatttattcctaacatcaatttagactctagattatagaatataacatttgtatatatgttatatgaaacatcgcgagccttacctcacga |
200 |
Q |
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| T |
23129711 |
tgagatatgcatttattcctaacatcaatttatactctagcttatagaatataacatttgtatatatgttatatgaaacatcgcgagccttacctcacga |
23129810 |
T |
|
| Q |
201 |
tctgcgaattgtttcagtttctcagcctgacttgttaccattcttaagtacatcatgtgctttacagttcgttccaacaggttatcaatgctacactgta |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
23129811 |
tctgcgaatcgtttcagtttctcagcctgacttgttaccattcttaagtacatcatgtgctttacggttcgttccaagaggttatcaatgctacactgta |
23129910 |
T |
|
| Q |
301 |
tatcaataggaccaaagttaaacaatttcgaaagtacgaaagggaaccgaaatactttacttttggtaataacatgcaaatacttacccttccaccatcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
23129911 |
tatcaataggaccaaagttaaacaatttcgaaagtacgaaagggaaccgaaatactttagttttggtagtaacatgcaaatacttacccttccaccatct |
23130010 |
T |
|
| Q |
401 |
gggataagttccctcaactccttcatcctatccatgat |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
23130011 |
gggataagttccctcaactccttcatcctatccatgat |
23130048 |
T |
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