View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_high_6 (Length: 323)
Name: NF5553_high_6
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 5251686 - 5251984
Alignment:
| Q |
19 |
aataagtaatagtcaaattcatctctaacatttttatattagagataaattagtttctctgttataatgagtcggagactgtggtataaaaatgctagcg |
118 |
Q |
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| T |
5251686 |
aataagtaatagtcaaattcatctctaacatttttatattagagataaattagtttctctgttataatgagtctgagactgtggtataaaaatgctagcg |
5251785 |
T |
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| Q |
119 |
actagtttagtattatttttgtcggtaggattaaattgggttgcaataaaactgtgaagatcttctctcaaaaacgaatgtcttgattatgttgatgtga |
218 |
Q |
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| T |
5251786 |
actagtttagtattatttttgtcggtaggattaaattgggttgcaataaaactgtgaagatcttctctcaaaaacgaatgtcttgattatgttgatgtga |
5251885 |
T |
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| Q |
219 |
aagtgtattttaggatggagaagtgtcttgtatagtctatggtaaatccataattgaaaaccgttcaaaattctaaaaaagatcaatgatgatgtccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5251886 |
aagtgtattttaggatggagaagtgtcttgtatagtctatggtaaatccataattgaaaaccgttcaaaattctaaaaaagatcaatgttgatgtccat |
5251984 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 24849735 - 24849777
Alignment:
| Q |
48 |
atttttatattagagataaattagtttctctgttataatgagt |
90 |
Q |
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| T |
24849735 |
atttttatattagagataaattaatctctatgttataatgagt |
24849777 |
T |
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