View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_high_7 (Length: 323)
Name: NF5553_high_7
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 13917485 - 13917177
Alignment:
| Q |
15 |
aaggagtactctaactcatatataaagcaaaaatgatatagagataatgagtact---ctaactcatacataatgcaaagagtatataaacttaattaaa |
111 |
Q |
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| T |
13917485 |
aaggagtactctaactcatata--aagcaaaaatgatatagagataatgagtactactctaactcatacataatgcaaagagtatataaacttaattaaa |
13917388 |
T |
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| Q |
112 |
gcgaatccaaaagacaacataaa-taatttgaatgtcaattgggaaaactatagcccttttctctcccttgagagatatcaaaccccatgaaataacttt |
210 |
Q |
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| T |
13917387 |
gcgaatccaaaagacaacataaaataatttgaatgtcaattggaaaaactatagcccttttctctcccttgagagatatcaaaccccatgaaataacttt |
13917288 |
T |
|
| Q |
211 |
--tataggtttaaccacgtccttgcaagtcaccttcttcccttc-aaaatgatctcatttttatggaaccaaattgaccaaacggtagacaatgaatctt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13917287 |
tatataggtttaaccacgtccttgcaagtcaccttcttcccttcaaaaatgatctcatttttatggaaccaaattgaccaaacggtagacaatgaatctt |
13917188 |
T |
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| Q |
308 |
cctatgcttct |
318 |
Q |
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||||| ||||| |
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| T |
13917187 |
cctattcttct |
13917177 |
T |
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