View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_high_9 (Length: 285)
Name: NF5553_high_9
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 39553827 - 39553564
Alignment:
| Q |
6 |
ccaccaccagaacctgaatctgatattaaaaccgacccgataataagtcgcatatactatgtaacaagcaaggaactcaacaaaatgcagtcactagcca |
105 |
Q |
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| T |
39553827 |
ccaccaccagaacctgaatctgatattaaaaccgacccaataataagtcgcatatactatgtaacaagcaaagaactcaacaacatgcagtcactagcca |
39553728 |
T |
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| Q |
106 |
actcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatga |
205 |
Q |
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| T |
39553727 |
actcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatga |
39553628 |
T |
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| Q |
206 |
aaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaa |
269 |
Q |
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| T |
39553627 |
aaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaa |
39553564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 39543808 - 39543545
Alignment:
| Q |
6 |
ccaccaccagaacctgaatctgatattaaaaccgacccgataataagtcgcatatactatgtaacaagcaaggaactcaacaaaatgcagtcactagcca |
105 |
Q |
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| T |
39543808 |
ccaccacctcaacttgaatctgatcaaaaaactgacccaataataagtcgcatatattatgtaacaagcaaagaactcaacaacatgcagtcacttgcca |
39543709 |
T |
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| Q |
106 |
actcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatga |
205 |
Q |
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| T |
39543708 |
actcaaacaataatggtggtagttccaaacgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatga |
39543609 |
T |
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| Q |
206 |
aaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaa |
269 |
Q |
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| T |
39543608 |
aaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaa |
39543545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 269
Target Start/End: Complemental strand, 39586910 - 39586671
Alignment:
| Q |
27 |
gatattaaaaccgacccgataataagtcgcatatactatgtaacaagcaaggaactcaacaaaatgcagtcactagccaactcaaacaataatggtggta |
126 |
Q |
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| T |
39586910 |
gatattaaaaccaacccactaataagtcgcatgtactacgtaacaagcgaagaactcaacaccatgcagttactagccaacacaaataata---gtggaa |
39586814 |
T |
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| Q |
127 |
gttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggg |
226 |
Q |
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| T |
39586813 |
gcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggg |
39586714 |
T |
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| Q |
227 |
gcttgtggttgacggaagaaagaggctaagcaacggtgacaaa |
269 |
Q |
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| T |
39586713 |
gattgtggttgacggaagaaagagattaagcaacggtgacaaa |
39586671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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