View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_low_11 (Length: 266)
Name: NF5553_low_11
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 46591969 - 46592215
Alignment:
| Q |
16 |
gccataacaactactcggctactggtcctgaaaaactgccagttagattttctcctgcaatatctcgccaactgctaccaacaatgctttaaaaagtgtt |
115 |
Q |
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| T |
46591969 |
gccataacaactactcggctactggtcctgaaaaactgccagttagcttttctcctgcaatatctcgccaactgctaccaacaatgctttaaaaagtgtt |
46592068 |
T |
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| Q |
116 |
tgaaattttgaaaactttatgggatgatttagcacaatgcta-ccaacaatgctaaagttgcaggcagcgtcctttggatctgaatgggtttggttagcc |
214 |
Q |
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| T |
46592069 |
tgaaattttgaaaactttatggggtgatttagcacaatgctacccaacaatgctaaagttgtaggcagcgtcctttggatctgaatgggtttggttagcc |
46592168 |
T |
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| Q |
215 |
cacatgaaggttttaagtttacaagagcatccacaatcgtgaggtttt |
262 |
Q |
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| T |
46592169 |
cacacgaaggttttaagtatataagag-atccacaatggtgaggtttt |
46592215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 51774936 - 51775006
Alignment:
| Q |
38 |
tggtcctgaaaaactgccagttagattttctcctgcaatatctcgccaactgctaccaacaatgctttaaaaa |
110 |
Q |
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| T |
51774936 |
tggtcctgacaagccgccagttagcttttctcctgca--atcttgtcaactcctaccaacaatgctttaaaaa |
51775006 |
T |
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