View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_low_13 (Length: 258)
Name: NF5553_low_13
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 964087 - 963921
Alignment:
| Q |
76 |
ttttattaaaacttcccgagtaactgatatacaaaatcactaattaacaaattgagctacaattcggccacaatttactctactcctctctaagtggcgc |
175 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||| |
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| T |
964087 |
ttttattaaaacttcccgagtaattgatatacgaaatcactaattaacaaattgagctacaatttggccacagtttactgtactcctctctaagtaacgc |
963988 |
T |
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| Q |
176 |
tttattatctcttctccaaataattatcatattaggttttacactttctttagtttcttgtttgttg |
242 |
Q |
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| T |
963987 |
tttattatctcttctccaaataattatcatattaggttttacactttctttagtttcttgtttgttg |
963921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 6476299 - 6476178
Alignment:
| Q |
18 |
agaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcact |
116 |
Q |
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| T |
6476299 |
agaaacgagaactttctatatcaaccatcagatttaattaacga-gtaagatttaattattttcttaaaaccttccgtgtaattgatatacaaaatcaga |
6476201 |
T |
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| Q |
117 |
aattaacaaattgagctacaatt |
139 |
Q |
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|||| |||||||||||||||| |
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| T |
6476200 |
ggttaataaattgagctacaatt |
6476178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 6745675 - 6745778
Alignment:
| Q |
35 |
tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcactaattaacaaattgagcta |
134 |
Q |
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| T |
6745675 |
tatcaaccatcagatttaattaaca-cgtaagatttaattattttcttaaaatcttccgtgtaattgatatacaaaattacaagttaataaattgagcta |
6745773 |
T |
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| Q |
135 |
caatt |
139 |
Q |
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||||| |
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| T |
6745774 |
caatt |
6745778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 6516429 - 6516308
Alignment:
| Q |
18 |
agaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcact |
116 |
Q |
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||||| ||||||| ||| |||||||||||| |||||||||||| | |||||| ||||| || ||||||| | | | ||| |||||||||||||||| |
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| T |
6516429 |
agaaacgagaactttctatatcaaccatcagatttaattaacg-cataagattaaattaccttcttaaaacattctgtataattgatatacaaaatcaca |
6516331 |
T |
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| Q |
117 |
aattaacaaattgagctacaatt |
139 |
Q |
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| |||| |||||||||||||||| |
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| T |
6516330 |
agttaataaattgagctacaatt |
6516308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 966940 - 966883
Alignment:
| Q |
18 |
agaaaggagaactatcttatcaaccatcaaatttaattaacggcgaaagatttaattat |
76 |
Q |
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| T |
966940 |
agaaacgagaattatcttatcaaccatcagatttaattaac-gcgtaagatttagttat |
966883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 14216818 - 14216678
Alignment:
| Q |
18 |
agaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcact |
116 |
Q |
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||||| ||||| ||||| |||||| ||||| |||||||||||| || ||||||||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
14216818 |
agaaacgagaattatctatatcaatcatcatatttaattaacg-cgtaagatttaattattttattaaaatctcccgtgtaattgatatacaaaatcaca |
14216720 |
T |
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| Q |
117 |
aattaacaaattgagctacaattcggccacaatttactctac |
158 |
Q |
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|||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
14216719 |
aattaacaaaatgagctgcaatttggccacaatttactctac |
14216678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 17247552 - 17247632
Alignment:
| Q |
35 |
tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcact |
116 |
Q |
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||||||||||| |||| ||||||| || ||||||||||||||| ||||||||| ||| |||| ||||||||||||||||| |
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| T |
17247552 |
tatcaaccatctgatttgattaacg-cgtgagatttaattatttttttaaaactttccgtgtaattgatatacaaaatcact |
17247632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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