View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_low_15 (Length: 249)
Name: NF5553_low_15
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 994268 - 994025
Alignment:
| Q |
1 |
aactgtatatcacgttttttaccgccttttcctcgcttttggccccatttgaattctagggtttcggattctggtgagggagcaggaggagagtctgatt |
100 |
Q |
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| T |
994268 |
aactgtatatcacgttttttaccgccttttcctcgcttttggccccatttgaattctagggtttcggattctggtgagggagcaggaggagagtttgatt |
994169 |
T |
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| Q |
101 |
tcactgtggatgaagatgagtgagatgttagaatttcagagctatatcaaaatcattggcacaagtgtatgatgttaacaatgttttcatgtacctgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
994168 |
tcactgtggatgaagatgagtgagatgttagaatttcagagctatatcaaaatcattggcacaagtgtatgatgttaacagtgttttcatgtacctgaga |
994069 |
T |
|
| Q |
201 |
tggttgagactggcatggttgtagatggtggtcggagaataatg |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
994068 |
tggttgagactggcatggttgtagatggtggtcggagaagaatg |
994025 |
T |
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