View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_low_19 (Length: 204)
Name: NF5553_low_19
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 43560934 - 43560742
Alignment:
| Q |
1 |
ttggccatgcataaacaagaattgaaaaacgagcttaccaataccgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagag |
100 |
Q |
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| T |
43560934 |
ttggccatgcataaacaagaattgaaaaacgagcttaccaataccgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagag |
43560835 |
T |
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| Q |
101 |
ccaaactggcttctttagagttcaatattgtttctcctagcattattcgcgaaaaagatacaatatagggtagaactcatacctttgcttctc |
193 |
Q |
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| T |
43560834 |
ccaaactggcttctttagagttcaatattgtttctcctagcattattcgcgaaaaagatacaatatagggtagaactcatacctttgtttctc |
43560742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 17730227 - 17730417
Alignment:
| Q |
2 |
tggccatgcataaacaagaattgaaaaacgagcttaccaataccgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagc |
101 |
Q |
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| T |
17730227 |
tggccatgcataaacaagaattgaaaaacgagcttacaaatatcgatgacgagcttatggaggttcgctcaaacttgaaggaagctctaaaggccagagc |
17730326 |
T |
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| Q |
102 |
caaactggcttctttagagttcaatattgtttctcctagcattattcgcgaaaaagatacaatatagggtagaactcatacctttgcttct |
192 |
Q |
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| T |
17730327 |
caaactggcttctttagagttcaatattttgtctcctaccattattcgcgaaaaagatacaatatagggtagaatttatacctttgtttct |
17730417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 43570167 - 43570028
Alignment:
| Q |
51 |
cgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcattattcgc |
150 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43570167 |
cgagcttatggaggttcgctcgaagttgaaagatgctctaaaggccagagccaaactggcttctttagagttcaatattttttctcctagcattattcgt |
43570068 |
T |
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| Q |
151 |
gaaaaagatacaatatagggtagaactcatacctttgcttct |
192 |
Q |
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| T |
43570067 |
gaaaaagataca--atagggtagaacttatgcctttgtttct |
43570028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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