View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_low_4 (Length: 444)
Name: NF5553_low_4
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 3862608 - 3862180
Alignment:
| Q |
1 |
cacatagacataatcttcatccctctccagtccaatcaccttagcagctgcaatccctgctacatgtaaatcttcctgagttccacaagcagcaagcaaa |
100 |
Q |
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| T |
3862608 |
cacatagacataatcttcatccctctccagtccaatcaccttagcagctgcaatctctgctacatgtaaatcttcctgagttccacaagcagcaagcaaa |
3862509 |
T |
|
| Q |
101 |
gacctccaaaccactccacatgactcaaaacctagttcatgtatcatcttttgtgctctcgacaactctcctttttgccccatgagccgtatcattgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862508 |
gacctccaaaccactccacatgactcaaaacctagttcatgtatcatcttttgtgctctcgacaactctcctttttgccccatgagccgtatcattgaac |
3862409 |
T |
|
| Q |
201 |
aacaatgcttaatggacggtgcaatcccatattcattaatcatagcatcaaaatactgaatacccatctcaaatggtatttggctatgtgaacatgctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862408 |
aacaatgcttaatggacggtgcaatcccatattcattaatcatagcatcaaaatactgaatacccatctcaaatggtatttggctatgtgaacatgctga |
3862309 |
T |
|
| Q |
301 |
tataacattaagaaatgtgataccgtcaggttttgtatctctttccattttcagcaactcgaataggctaatagcttgtgcagaatcgctgttgcgagca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
3862308 |
tataacattaagaaatgtgataccgtcaggttttgtatctctttccattttcagcaactcgaataggctaatagcttgtgcagaatcaccgttgcgagca |
3862209 |
T |
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| Q |
401 |
tacccatatatcattgcattccagcttac |
429 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3862208 |
tacccatatatcattgcattccagcttac |
3862180 |
T |
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